Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
VCPP55072 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC17.92■□□□□ 0.46
VCPP55072 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VCPP55072 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VCPP55072 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VCPP55072 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC17.92■□□□□ 0.46
VCPP55072 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC17.92■□□□□ 0.46
VCPP55072 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VCPP55072 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VCPP55072 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VCPP55072 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VCPP55072 TSPY16P-201ENST00000449843 468 ntBASIC17.92■□□□□ 0.46
VCPP55072 AC022494.1-201ENST00000466044 728 ntBASIC17.92■□□□□ 0.46
VCPP55072 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VCPP55072 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VCPP55072 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VCPP55072 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
VCPP55072 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VCPP55072 OS9-205ENST00000413095 1660 ntTSL 2 BASIC17.92■□□□□ 0.46
VCPP55072 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VCPP55072 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC17.92■□□□□ 0.46
VCPP55072 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VCPP55072 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC17.92■□□□□ 0.46
VCPP55072 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
VCPP55072 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VCPP55072 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC17.92■□□□□ 0.46
VCPP55072 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC17.91■□□□□ 0.46
VCPP55072 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
VCPP55072 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC17.91■□□□□ 0.46
VCPP55072 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
VCPP55072 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
VCPP55072 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VCPP55072 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC17.91■□□□□ 0.46
VCPP55072 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VCPP55072 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
VCPP55072 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC17.91■□□□□ 0.46
VCPP55072 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VCPP55072 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VCPP55072 OR8S1-201ENST00000310194 1080 ntBASIC17.91■□□□□ 0.46
VCPP55072 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
VCPP55072 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC17.91■□□□□ 0.46
VCPP55072 TFAMP1-201ENST00000412727 736 ntBASIC17.91■□□□□ 0.46
VCPP55072 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC17.91■□□□□ 0.46
VCPP55072 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC17.91■□□□□ 0.46
VCPP55072 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC17.91■□□□□ 0.46
VCPP55072 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC17.91■□□□□ 0.46
VCPP55072 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
VCPP55072 SERF2-217ENST00000630046 862 ntTSL 5 BASIC17.91■□□□□ 0.46
VCPP55072 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
VCPP55072 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VCPP55072 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VCPP55072 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC17.91■□□□□ 0.46
VCPP55072 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
VCPP55072 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC17.91■□□□□ 0.46
VCPP55072 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
VCPP55072 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.91■□□□□ 0.46
VCPP55072 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC17.91■□□□□ 0.46
VCPP55072 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VCPP55072 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC17.91■□□□□ 0.46
VCPP55072 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VCPP55072 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC17.9■□□□□ 0.46
VCPP55072 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
VCPP55072 FLJ38576-201ENST00000623820 2459 ntBASIC17.9■□□□□ 0.46
VCPP55072 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
VCPP55072 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
VCPP55072 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VCPP55072 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VCPP55072 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
VCPP55072 RHOQP3-201ENST00000437982 621 ntBASIC17.9■□□□□ 0.46
VCPP55072 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC17.9■□□□□ 0.46
VCPP55072 UGT1A2P-201ENST00000454886 866 ntBASIC17.9■□□□□ 0.46
VCPP55072 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
VCPP55072 AC067863.1-201ENST00000494933 530 ntBASIC17.9■□□□□ 0.46
VCPP55072 AP005018.1-201ENST00000525475 301 ntBASIC17.9■□□□□ 0.46
VCPP55072 CIPC-205ENST00000555437 566 ntTSL 3 BASIC17.9■□□□□ 0.46
VCPP55072 AC015911.4-201ENST00000588022 1070 ntBASIC17.9■□□□□ 0.46
VCPP55072 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
VCPP55072 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
VCPP55072 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC17.9■□□□□ 0.46
VCPP55072 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VCPP55072 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VCPP55072 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VCPP55072 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC17.9■□□□□ 0.46
VCPP55072 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
VCPP55072 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
VCPP55072 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
VCPP55072 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
VCPP55072 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.46
VCPP55072 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC17.89■□□□□ 0.46
VCPP55072 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VCPP55072 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VCPP55072 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC17.89■□□□□ 0.45
VCPP55072 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
VCPP55072 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
VCPP55072 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
VCPP55072 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC17.89■□□□□ 0.45
VCPP55072 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VCPP55072 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
VCPP55072 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
VCPP55072 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms