Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC17.05■□□□□ 0.32
COL9A1P20849 SDHAP3-202ENST00000515467 728 ntBASIC17.05■□□□□ 0.32
COL9A1P20849 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC17.05■□□□□ 0.32
COL9A1P20849 MIR4750-201ENST00000584564 56 ntBASIC17.05■□□□□ 0.32
COL9A1P20849 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC17.05■□□□□ 0.32
COL9A1P20849 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC17.05■□□□□ 0.32
COL9A1P20849 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC17.05■□□□□ 0.32
COL9A1P20849 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC17.05■□□□□ 0.32
COL9A1P20849 RN7SL725P-201ENST00000606439 259 ntBASIC17.05■□□□□ 0.32
COL9A1P20849 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL9A1P20849 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC17.05■□□□□ 0.32
COL9A1P20849 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL9A1P20849 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL9A1P20849 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL9A1P20849 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC17.05■□□□□ 0.32
COL9A1P20849 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC17.05■□□□□ 0.32
COL9A1P20849 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL9A1P20849 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC17.05■□□□□ 0.32
COL9A1P20849 AL353732.1-201ENST00000569618 1459 ntBASIC17.05■□□□□ 0.32
COL9A1P20849 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC17.05■□□□□ 0.32
COL9A1P20849 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL9A1P20849 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC17.05■□□□□ 0.32
COL9A1P20849 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC17.04■□□□□ 0.32
COL9A1P20849 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL9A1P20849 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
COL9A1P20849 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL9A1P20849 SLC22A20-204ENST00000530038 1673 ntBASIC17.04■□□□□ 0.32
COL9A1P20849 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL9A1P20849 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL9A1P20849 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL9A1P20849 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
COL9A1P20849 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL9A1P20849 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC17.04■□□□□ 0.32
COL9A1P20849 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC17.04■□□□□ 0.32
COL9A1P20849 EGFEM1P-202ENST00000431685 1563 ntBASIC17.04■□□□□ 0.32
COL9A1P20849 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
COL9A1P20849 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL9A1P20849 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL9A1P20849 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC17.04■□□□□ 0.32
COL9A1P20849 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL9A1P20849 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL9A1P20849 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL9A1P20849 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC17.04■□□□□ 0.32
COL9A1P20849 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC17.04■□□□□ 0.32
COL9A1P20849 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC17.04■□□□□ 0.32
COL9A1P20849 LINC01090-202ENST00000434418 560 ntTSL 5 BASIC17.04■□□□□ 0.32
COL9A1P20849 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC17.04■□□□□ 0.32
COL9A1P20849 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC17.04■□□□□ 0.32
COL9A1P20849 EIF4HP1-201ENST00000453115 687 ntBASIC17.04■□□□□ 0.32
COL9A1P20849 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
COL9A1P20849 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC17.04■□□□□ 0.32
COL9A1P20849 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC17.04■□□□□ 0.32
COL9A1P20849 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC17.04■□□□□ 0.32
COL9A1P20849 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC17.04■□□□□ 0.32
COL9A1P20849 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL9A1P20849 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC17.04■□□□□ 0.32
COL9A1P20849 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL9A1P20849 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL9A1P20849 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL9A1P20849 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL9A1P20849 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL9A1P20849 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL9A1P20849 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL9A1P20849 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL9A1P20849 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL9A1P20849 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL9A1P20849 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL9A1P20849 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
COL9A1P20849 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL9A1P20849 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL9A1P20849 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
COL9A1P20849 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC17.03■□□□□ 0.32
COL9A1P20849 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
COL9A1P20849 LBX2-201ENST00000341396 886 ntTSL 3 BASIC17.03■□□□□ 0.32
COL9A1P20849 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
COL9A1P20849 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
COL9A1P20849 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
COL9A1P20849 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC17.03■□□□□ 0.32
COL9A1P20849 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC17.03■□□□□ 0.32
COL9A1P20849 ARTN-209ENST00000479128 471 ntTSL 3 BASIC17.03■□□□□ 0.32
COL9A1P20849 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
COL9A1P20849 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
COL9A1P20849 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC17.03■□□□□ 0.32
COL9A1P20849 PIGL-212ENST00000581006 554 ntTSL 4 BASIC17.03■□□□□ 0.32
COL9A1P20849 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC17.03■□□□□ 0.32
COL9A1P20849 AC004790.1-201ENST00000612686 536 ntBASIC17.03■□□□□ 0.32
COL9A1P20849 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
COL9A1P20849 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
COL9A1P20849 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL9A1P20849 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL9A1P20849 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL9A1P20849 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC17.03■□□□□ 0.32
COL9A1P20849 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC17.03■□□□□ 0.32
COL9A1P20849 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC17.03■□□□□ 0.32
COL9A1P20849 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL9A1P20849 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
COL9A1P20849 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
COL9A1P20849 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
COL9A1P20849 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL9A1P20849 AC018665.1-201ENST00000622927 1362 ntBASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms