Protein–RNA interactions for Protein: P02708

CHRNA1, Acetylcholine receptor subunit alpha, humanhuman

Predictions only

Length 482 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1P02708 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CHRNA1P02708 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CHRNA1P02708 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CHRNA1P02708 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
CHRNA1P02708 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CHRNA1P02708 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
CHRNA1P02708 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CHRNA1P02708 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CHRNA1P02708 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CHRNA1P02708 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.04■□□□□ 0.48
CHRNA1P02708 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CHRNA1P02708 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CHRNA1P02708 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.03■□□□□ 0.48
CHRNA1P02708 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC18.03■□□□□ 0.48
CHRNA1P02708 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CHRNA1P02708 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC18.03■□□□□ 0.48
CHRNA1P02708 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC18.03■□□□□ 0.48
CHRNA1P02708 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC18.03■□□□□ 0.48
CHRNA1P02708 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CHRNA1P02708 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CHRNA1P02708 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CHRNA1P02708 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CHRNA1P02708 GK-202ENST00000378941 458 ntTSL 3 BASIC18.03■□□□□ 0.48
CHRNA1P02708 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
CHRNA1P02708 VMO1-203ENST00000416307 712 ntTSL 2 BASIC18.03■□□□□ 0.48
CHRNA1P02708 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC18.03■□□□□ 0.48
CHRNA1P02708 NME2P1-201ENST00000426182 414 ntBASIC18.03■□□□□ 0.48
CHRNA1P02708 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC18.03■□□□□ 0.48
CHRNA1P02708 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC18.03■□□□□ 0.48
CHRNA1P02708 STOM-203ENST00000538954 1257 ntTSL 5 BASIC18.03■□□□□ 0.48
CHRNA1P02708 AL079307.3-201ENST00000556114 283 ntBASIC18.03■□□□□ 0.48
CHRNA1P02708 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC18.03■□□□□ 0.48
CHRNA1P02708 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
CHRNA1P02708 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC18.03■□□□□ 0.48
CHRNA1P02708 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CHRNA1P02708 SRP9-204ENST00000619790 377 ntTSL 2 BASIC18.03■□□□□ 0.48
CHRNA1P02708 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
CHRNA1P02708 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CHRNA1P02708 AC004840.1-201ENST00000636359 365 ntBASIC18.03■□□□□ 0.48
CHRNA1P02708 AL139011.1-202ENST00000642063 584 ntBASIC18.03■□□□□ 0.48
CHRNA1P02708 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
CHRNA1P02708 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
CHRNA1P02708 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC18.03■□□□□ 0.48
CHRNA1P02708 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CHRNA1P02708 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC18.03■□□□□ 0.48
CHRNA1P02708 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
CHRNA1P02708 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CHRNA1P02708 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.03■□□□□ 0.48
CHRNA1P02708 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC18.03■□□□□ 0.48
CHRNA1P02708 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CHRNA1P02708 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CHRNA1P02708 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC18.02■□□□□ 0.48
CHRNA1P02708 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC18.02■□□□□ 0.48
CHRNA1P02708 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CHRNA1P02708 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CHRNA1P02708 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CHRNA1P02708 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC18.02■□□□□ 0.48
CHRNA1P02708 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
CHRNA1P02708 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CHRNA1P02708 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CHRNA1P02708 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CHRNA1P02708 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
CHRNA1P02708 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CHRNA1P02708 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CHRNA1P02708 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC18.02■□□□□ 0.48
CHRNA1P02708 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC18.02■□□□□ 0.48
CHRNA1P02708 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
CHRNA1P02708 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CHRNA1P02708 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CHRNA1P02708 AL080243.2-201ENST00000418783 582 ntBASIC18.02■□□□□ 0.48
CHRNA1P02708 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CHRNA1P02708 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC18.02■□□□□ 0.48
CHRNA1P02708 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC18.02■□□□□ 0.48
CHRNA1P02708 AC093724.1-201ENST00000448659 1027 ntBASIC18.02■□□□□ 0.48
CHRNA1P02708 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
CHRNA1P02708 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC18.02■□□□□ 0.48
CHRNA1P02708 CR383656.12-201ENST00000549567 513 ntBASIC18.02■□□□□ 0.48
CHRNA1P02708 PRR29-204ENST00000577953 565 ntTSL 4 BASIC18.02■□□□□ 0.48
CHRNA1P02708 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC18.02■□□□□ 0.48
CHRNA1P02708 AL358472.5-202ENST00000641448 1267 ntBASIC18.02■□□□□ 0.48
CHRNA1P02708 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CHRNA1P02708 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.47
CHRNA1P02708 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC18.02■□□□□ 0.47
CHRNA1P02708 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CHRNA1P02708 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC18.02■□□□□ 0.47
CHRNA1P02708 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CHRNA1P02708 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CHRNA1P02708 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CHRNA1P02708 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CHRNA1P02708 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CHRNA1P02708 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
CHRNA1P02708 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CHRNA1P02708 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CHRNA1P02708 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CHRNA1P02708 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CHRNA1P02708 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CHRNA1P02708 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC18.01■□□□□ 0.47
CHRNA1P02708 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CHRNA1P02708 CENPM-206ENST00000407253 818 ntTSL 2 BASIC18.01■□□□□ 0.47
CHRNA1P02708 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms