Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
COL3A1P02461 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC21.81■■□□□ 1.08
COL3A1P02461 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
COL3A1P02461 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC21.81■■□□□ 1.08
COL3A1P02461 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL3A1P02461 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL3A1P02461 NF2-208ENST00000403435 2568 ntTSL 5 BASIC21.81■■□□□ 1.08
COL3A1P02461 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
COL3A1P02461 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC21.81■■□□□ 1.08
COL3A1P02461 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC21.81■■□□□ 1.08
COL3A1P02461 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL3A1P02461 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC21.81■■□□□ 1.08
COL3A1P02461 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL3A1P02461 MIR770-201ENST00000390219 98 ntBASIC21.81■■□□□ 1.08
COL3A1P02461 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC21.81■■□□□ 1.08
COL3A1P02461 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC21.81■■□□□ 1.08
COL3A1P02461 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC21.81■■□□□ 1.08
COL3A1P02461 COQ9-214ENST00000567933 882 ntTSL 3 BASIC21.81■■□□□ 1.08
COL3A1P02461 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL3A1P02461 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.08
COL3A1P02461 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC21.81■■□□□ 1.08
COL3A1P02461 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL3A1P02461 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL3A1P02461 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC21.81■■□□□ 1.08
COL3A1P02461 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL3A1P02461 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
COL3A1P02461 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
COL3A1P02461 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL3A1P02461 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
COL3A1P02461 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC21.8■■□□□ 1.08
COL3A1P02461 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
COL3A1P02461 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL3A1P02461 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL3A1P02461 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL3A1P02461 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
COL3A1P02461 MIR661-201ENST00000384842 89 ntBASIC21.8■■□□□ 1.08
COL3A1P02461 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL3A1P02461 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL3A1P02461 CENPM-205ENST00000404067 905 ntTSL 3 BASIC21.8■■□□□ 1.08
COL3A1P02461 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC21.8■■□□□ 1.08
COL3A1P02461 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC21.8■■□□□ 1.08
COL3A1P02461 AC069120.2-201ENST00000524091 540 ntBASIC21.8■■□□□ 1.08
COL3A1P02461 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC21.8■■□□□ 1.08
COL3A1P02461 AQP6-203ENST00000551733 849 ntTSL 3 BASIC21.8■■□□□ 1.08
COL3A1P02461 AL138828.2-201ENST00000615812 383 ntBASIC21.8■■□□□ 1.08
COL3A1P02461 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC21.8■■□□□ 1.08
COL3A1P02461 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC21.8■■□□□ 1.08
COL3A1P02461 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
COL3A1P02461 AL592424.1-201ENST00000563624 1536 ntBASIC21.8■■□□□ 1.08
COL3A1P02461 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC21.8■■□□□ 1.08
COL3A1P02461 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
COL3A1P02461 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL3A1P02461 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL3A1P02461 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC21.79■■□□□ 1.08
COL3A1P02461 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
COL3A1P02461 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC21.79■■□□□ 1.08
COL3A1P02461 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC21.79■■□□□ 1.08
COL3A1P02461 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC21.79■■□□□ 1.08
COL3A1P02461 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL3A1P02461 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
COL3A1P02461 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
COL3A1P02461 MRPS18AP1-201ENST00000414458 589 ntBASIC21.79■■□□□ 1.08
COL3A1P02461 POU5F1P6-201ENST00000466990 990 ntBASIC21.79■■□□□ 1.08
COL3A1P02461 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC21.79■■□□□ 1.08
COL3A1P02461 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
COL3A1P02461 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
COL3A1P02461 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
COL3A1P02461 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
COL3A1P02461 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
COL3A1P02461 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC21.79■■□□□ 1.08
COL3A1P02461 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
COL3A1P02461 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
COL3A1P02461 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC21.79■■□□□ 1.08
COL3A1P02461 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
COL3A1P02461 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL3A1P02461 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL3A1P02461 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL3A1P02461 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
COL3A1P02461 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
COL3A1P02461 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC21.79■■□□□ 1.08
COL3A1P02461 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
COL3A1P02461 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC21.78■■□□□ 1.08
COL3A1P02461 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
COL3A1P02461 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC21.78■■□□□ 1.08
COL3A1P02461 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL3A1P02461 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
COL3A1P02461 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
COL3A1P02461 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
COL3A1P02461 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
COL3A1P02461 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC21.78■■□□□ 1.08
COL3A1P02461 AL844908.2-201ENST00000609461 460 ntBASIC21.78■■□□□ 1.08
COL3A1P02461 AL390754.1-201ENST00000619088 582 ntBASIC21.78■■□□□ 1.08
COL3A1P02461 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL3A1P02461 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL3A1P02461 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL3A1P02461 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL3A1P02461 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC21.78■■□□□ 1.08
COL3A1P02461 U82695.1-201ENST00000635752 1889 ntBASIC21.78■■□□□ 1.08
COL3A1P02461 CA12-203ENST00000422263 2556 ntTSL 2 BASIC21.78■■□□□ 1.08
COL3A1P02461 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms