Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PDGFBP01127 AL671710.1-201ENST00000610245 2349 ntBASIC16.6■□□□□ 0.25
PDGFBP01127 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC16.6■□□□□ 0.25
PDGFBP01127 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PDGFBP01127 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC16.6■□□□□ 0.25
PDGFBP01127 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
PDGFBP01127 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PDGFBP01127 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PDGFBP01127 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
PDGFBP01127 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PDGFBP01127 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PDGFBP01127 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC16.59■□□□□ 0.25
PDGFBP01127 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC16.59■□□□□ 0.25
PDGFBP01127 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC16.59■□□□□ 0.25
PDGFBP01127 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
PDGFBP01127 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PDGFBP01127 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PDGFBP01127 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PDGFBP01127 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PDGFBP01127 NSL1-201ENST00000366976 722 ntTSL 2 BASIC16.59■□□□□ 0.25
PDGFBP01127 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PDGFBP01127 SPDYE17-201ENST00000412399 783 ntBASIC16.59■□□□□ 0.25
PDGFBP01127 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC16.59■□□□□ 0.25
PDGFBP01127 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC16.59■□□□□ 0.25
PDGFBP01127 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC16.59■□□□□ 0.25
PDGFBP01127 AC092337.1-201ENST00000568699 1129 ntBASIC16.59■□□□□ 0.25
PDGFBP01127 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC16.59■□□□□ 0.25
PDGFBP01127 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC16.59■□□□□ 0.25
PDGFBP01127 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PDGFBP01127 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PDGFBP01127 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC16.59■□□□□ 0.25
PDGFBP01127 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC16.59■□□□□ 0.25
PDGFBP01127 AC006538.1-201ENST00000567905 1585 ntBASIC16.59■□□□□ 0.25
PDGFBP01127 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PDGFBP01127 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PDGFBP01127 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PDGFBP01127 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC16.58■□□□□ 0.25
PDGFBP01127 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
PDGFBP01127 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.25
PDGFBP01127 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC16.58■□□□□ 0.25
PDGFBP01127 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
PDGFBP01127 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC16.58■□□□□ 0.24
PDGFBP01127 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
PDGFBP01127 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PDGFBP01127 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC16.58■□□□□ 0.24
PDGFBP01127 AC104596.2-201ENST00000512793 793 ntBASIC16.58■□□□□ 0.24
PDGFBP01127 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC16.58■□□□□ 0.24
PDGFBP01127 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PDGFBP01127 C2orf69P2-201ENST00000562032 1123 ntBASIC16.58■□□□□ 0.24
PDGFBP01127 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC16.58■□□□□ 0.24
PDGFBP01127 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
PDGFBP01127 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
PDGFBP01127 MIR6069-201ENST00000620069 79 ntBASIC16.58■□□□□ 0.24
PDGFBP01127 AL021920.2-201ENST00000624828 1351 ntBASIC16.58■□□□□ 0.24
PDGFBP01127 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC16.58■□□□□ 0.24
PDGFBP01127 LOX-206ENST00000639739 1626 ntTSL 5 BASIC16.58■□□□□ 0.24
PDGFBP01127 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
PDGFBP01127 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC16.58■□□□□ 0.24
PDGFBP01127 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC16.58■□□□□ 0.24
PDGFBP01127 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC16.58■□□□□ 0.24
PDGFBP01127 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PDGFBP01127 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC16.57■□□□□ 0.24
PDGFBP01127 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC16.57■□□□□ 0.24
PDGFBP01127 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC16.57■□□□□ 0.24
PDGFBP01127 AC012317.2-201ENST00000623305 2251 ntBASIC16.57■□□□□ 0.24
PDGFBP01127 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
PDGFBP01127 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC16.57■□□□□ 0.24
PDGFBP01127 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PDGFBP01127 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
PDGFBP01127 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
PDGFBP01127 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC16.57■□□□□ 0.24
PDGFBP01127 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
PDGFBP01127 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC16.57■□□□□ 0.24
PDGFBP01127 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
PDGFBP01127 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PDGFBP01127 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PDGFBP01127 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC16.57■□□□□ 0.24
PDGFBP01127 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PDGFBP01127 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC16.57■□□□□ 0.24
PDGFBP01127 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC16.57■□□□□ 0.24
PDGFBP01127 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PDGFBP01127 SLC25A1P3-201ENST00000395415 828 ntBASIC16.57■□□□□ 0.24
PDGFBP01127 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
PDGFBP01127 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC16.57■□□□□ 0.24
PDGFBP01127 BCRP2-202ENST00000447763 634 ntBASIC16.57■□□□□ 0.24
PDGFBP01127 PFN1P12-201ENST00000455938 534 ntBASIC16.57■□□□□ 0.24
PDGFBP01127 BCRP6-201ENST00000510112 632 ntBASIC16.57■□□□□ 0.24
PDGFBP01127 BCRP7-201ENST00000511549 544 ntBASIC16.57■□□□□ 0.24
PDGFBP01127 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PDGFBP01127 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC16.57■□□□□ 0.24
PDGFBP01127 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC16.57■□□□□ 0.24
PDGFBP01127 MIR5189-201ENST00000577370 114 ntBASIC16.57■□□□□ 0.24
PDGFBP01127 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC16.57■□□□□ 0.24
PDGFBP01127 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PDGFBP01127 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
PDGFBP01127 AL021578.1-201ENST00000613646 709 ntBASIC16.57■□□□□ 0.24
PDGFBP01127 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC16.57■□□□□ 0.24
PDGFBP01127 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC16.57■□□□□ 0.24
PDGFBP01127 ABBA01031660.1-201ENST00000635219 756 ntBASIC16.57■□□□□ 0.24
PDGFBP01127 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms