Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LDB3O75112 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
LDB3O75112 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC15.73■□□□□ 0.11
LDB3O75112 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC15.73■□□□□ 0.11
LDB3O75112 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
LDB3O75112 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC15.72■□□□□ 0.11
LDB3O75112 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC15.72■□□□□ 0.11
LDB3O75112 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC15.72■□□□□ 0.11
LDB3O75112 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC15.72■□□□□ 0.11
LDB3O75112 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
LDB3O75112 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC15.72■□□□□ 0.11
LDB3O75112 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
LDB3O75112 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
LDB3O75112 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LDB3O75112 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC15.72■□□□□ 0.11
LDB3O75112 KRT8P39-201ENST00000396270 1433 ntBASIC15.72■□□□□ 0.11
LDB3O75112 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
LDB3O75112 IMP4-203ENST00000409935 958 ntTSL 5 BASIC15.72■□□□□ 0.11
LDB3O75112 STARD13-205ENST00000439831 945 ntTSL 2 BASIC15.72■□□□□ 0.11
LDB3O75112 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC15.72■□□□□ 0.11
LDB3O75112 AC074386.1-202ENST00000463561 864 ntBASIC15.72■□□□□ 0.11
LDB3O75112 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC15.72■□□□□ 0.11
LDB3O75112 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC15.72■□□□□ 0.11
LDB3O75112 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC15.72■□□□□ 0.11
LDB3O75112 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC15.72■□□□□ 0.11
LDB3O75112 COX5A-206ENST00000568783 571 ntTSL 3 BASIC15.72■□□□□ 0.11
LDB3O75112 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LDB3O75112 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC15.72■□□□□ 0.11
LDB3O75112 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LDB3O75112 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LDB3O75112 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LDB3O75112 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LDB3O75112 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LDB3O75112 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC15.72■□□□□ 0.11
LDB3O75112 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC15.72■□□□□ 0.11
LDB3O75112 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LDB3O75112 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
LDB3O75112 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LDB3O75112 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LDB3O75112 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LDB3O75112 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
LDB3O75112 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LDB3O75112 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC15.72■□□□□ 0.11
LDB3O75112 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LDB3O75112 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LDB3O75112 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LDB3O75112 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
LDB3O75112 REM2-202ENST00000536884 1331 ntTSL 2 BASIC15.71■□□□□ 0.11
LDB3O75112 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC15.71■□□□□ 0.11
LDB3O75112 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
LDB3O75112 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LDB3O75112 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LDB3O75112 AC006538.1-201ENST00000567905 1585 ntBASIC15.71■□□□□ 0.11
LDB3O75112 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC15.71■□□□□ 0.11
LDB3O75112 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LDB3O75112 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LDB3O75112 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
LDB3O75112 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LDB3O75112 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC15.71■□□□□ 0.11
LDB3O75112 OS9-205ENST00000413095 1660 ntTSL 2 BASIC15.71■□□□□ 0.11
LDB3O75112 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LDB3O75112 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
LDB3O75112 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LDB3O75112 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
LDB3O75112 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LDB3O75112 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
LDB3O75112 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LDB3O75112 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LDB3O75112 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC15.71■□□□□ 0.11
LDB3O75112 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC15.71■□□□□ 0.11
LDB3O75112 WDR53-204ENST00000433160 887 ntTSL 5 BASIC15.71■□□□□ 0.11
LDB3O75112 NMU-203ENST00000507338 658 ntTSL 3 BASIC15.71■□□□□ 0.11
LDB3O75112 AC002347.1-201ENST00000569543 541 ntBASIC15.71■□□□□ 0.11
LDB3O75112 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LDB3O75112 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC15.71■□□□□ 0.11
LDB3O75112 AL139011.1-202ENST00000642063 584 ntBASIC15.71■□□□□ 0.11
LDB3O75112 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LDB3O75112 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LDB3O75112 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LDB3O75112 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC15.71■□□□□ 0.11
LDB3O75112 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC15.71■□□□□ 0.11
LDB3O75112 AL512652.2-201ENST00000625156 1716 ntBASIC15.71■□□□□ 0.1
LDB3O75112 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
LDB3O75112 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
LDB3O75112 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.1
LDB3O75112 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
LDB3O75112 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
LDB3O75112 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
LDB3O75112 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LDB3O75112 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC15.7■□□□□ 0.1
LDB3O75112 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
LDB3O75112 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
LDB3O75112 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC15.7■□□□□ 0.1
LDB3O75112 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LDB3O75112 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LDB3O75112 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC15.7■□□□□ 0.1
LDB3O75112 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC15.7■□□□□ 0.1
LDB3O75112 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC15.7■□□□□ 0.1
LDB3O75112 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
LDB3O75112 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms