Protein–RNA interactions for Protein: O43175

PHGDH, D-3-phosphoglycerate dehydrogenase, humanhuman

Known RBP Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDHO43175 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC16.68■□□□□ 0.26
PHGDHO43175 SKP2-204ENST00000508514 821 ntTSL 3 BASIC16.68■□□□□ 0.26
PHGDHO43175 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PHGDHO43175 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PHGDHO43175 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC16.68■□□□□ 0.26
PHGDHO43175 TPM1-218ENST00000559281 851 ntTSL 5 BASIC16.68■□□□□ 0.26
PHGDHO43175 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC16.68■□□□□ 0.26
PHGDHO43175 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PHGDHO43175 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC16.68■□□□□ 0.26
PHGDHO43175 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PHGDHO43175 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PHGDHO43175 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PHGDHO43175 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC16.68■□□□□ 0.26
PHGDHO43175 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
PHGDHO43175 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PHGDHO43175 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PHGDHO43175 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC16.68■□□□□ 0.26
PHGDHO43175 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PHGDHO43175 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PHGDHO43175 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PHGDHO43175 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PHGDHO43175 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC16.67■□□□□ 0.26
PHGDHO43175 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
PHGDHO43175 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PHGDHO43175 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PHGDHO43175 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
PHGDHO43175 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PHGDHO43175 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PHGDHO43175 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC16.67■□□□□ 0.26
PHGDHO43175 HARS-204ENST00000438307 1789 ntTSL 2 BASIC16.67■□□□□ 0.26
PHGDHO43175 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC16.67■□□□□ 0.26
PHGDHO43175 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
PHGDHO43175 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC16.67■□□□□ 0.26
PHGDHO43175 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC16.67■□□□□ 0.26
PHGDHO43175 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PHGDHO43175 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC16.67■□□□□ 0.26
PHGDHO43175 AKR1C7P-201ENST00000305623 895 ntBASIC16.67■□□□□ 0.26
PHGDHO43175 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC16.67■□□□□ 0.26
PHGDHO43175 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC16.67■□□□□ 0.26
PHGDHO43175 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PHGDHO43175 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC16.67■□□□□ 0.26
PHGDHO43175 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC16.67■□□□□ 0.26
PHGDHO43175 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC16.67■□□□□ 0.26
PHGDHO43175 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC16.67■□□□□ 0.26
PHGDHO43175 AC087163.2-201ENST00000457299 853 ntBASIC16.67■□□□□ 0.26
PHGDHO43175 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PHGDHO43175 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC16.67■□□□□ 0.26
PHGDHO43175 MSRA-206ENST00000521209 814 ntTSL 3 BASIC16.67■□□□□ 0.26
PHGDHO43175 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC16.67■□□□□ 0.26
PHGDHO43175 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
PHGDHO43175 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC16.67■□□□□ 0.26
PHGDHO43175 AC091304.2-201ENST00000564639 760 ntBASIC16.67■□□□□ 0.26
PHGDHO43175 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC16.67■□□□□ 0.26
PHGDHO43175 PAM16-208ENST00000573553 722 ntTSL 2 BASIC16.67■□□□□ 0.26
PHGDHO43175 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PHGDHO43175 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC16.67■□□□□ 0.26
PHGDHO43175 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PHGDHO43175 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC16.67■□□□□ 0.26
PHGDHO43175 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PHGDHO43175 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC16.67■□□□□ 0.26
PHGDHO43175 AC004706.3-202ENST00000621574 984 ntBASIC16.67■□□□□ 0.26
PHGDHO43175 AL139011.1-202ENST00000642063 584 ntBASIC16.67■□□□□ 0.26
PHGDHO43175 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC16.67■□□□□ 0.26
PHGDHO43175 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
PHGDHO43175 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
PHGDHO43175 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PHGDHO43175 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PHGDHO43175 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.67■□□□□ 0.26
PHGDHO43175 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
PHGDHO43175 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
PHGDHO43175 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC16.67■□□□□ 0.26
PHGDHO43175 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PHGDHO43175 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
PHGDHO43175 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC16.67■□□□□ 0.26
PHGDHO43175 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
PHGDHO43175 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC16.67■□□□□ 0.26
PHGDHO43175 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC16.67■□□□□ 0.26
PHGDHO43175 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
PHGDHO43175 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PHGDHO43175 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PHGDHO43175 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PHGDHO43175 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PHGDHO43175 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PHGDHO43175 AC002310.6-201ENST00000624451 1377 ntBASIC16.66■□□□□ 0.26
PHGDHO43175 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC16.66■□□□□ 0.26
PHGDHO43175 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC16.66■□□□□ 0.26
PHGDHO43175 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PHGDHO43175 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PHGDHO43175 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
PHGDHO43175 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PHGDHO43175 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PHGDHO43175 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC16.66■□□□□ 0.26
PHGDHO43175 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PHGDHO43175 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
PHGDHO43175 ELK2BP-201ENST00000415014 1224 ntBASIC16.66■□□□□ 0.26
PHGDHO43175 NMU-205ENST00000511469 756 ntTSL 3 BASIC16.66■□□□□ 0.26
PHGDHO43175 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC16.66■□□□□ 0.26
PHGDHO43175 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC16.66■□□□□ 0.26
PHGDHO43175 PRELID1P1-202ENST00000567272 903 ntBASIC16.66■□□□□ 0.26
PHGDHO43175 PRR29-207ENST00000580752 458 ntTSL 3 BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms