Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC16.32■□□□□ 0.2
HDAC3O15379 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
HDAC3O15379 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC16.32■□□□□ 0.2
HDAC3O15379 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC16.32■□□□□ 0.2
HDAC3O15379 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HDAC3O15379 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC16.32■□□□□ 0.2
HDAC3O15379 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC16.32■□□□□ 0.2
HDAC3O15379 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HDAC3O15379 AL512652.2-201ENST00000625156 1716 ntBASIC16.32■□□□□ 0.2
HDAC3O15379 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC16.32■□□□□ 0.2
HDAC3O15379 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC16.32■□□□□ 0.2
HDAC3O15379 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HDAC3O15379 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
HDAC3O15379 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
HDAC3O15379 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
HDAC3O15379 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HDAC3O15379 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.31■□□□□ 0.2
HDAC3O15379 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HDAC3O15379 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC16.31■□□□□ 0.2
HDAC3O15379 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC16.31■□□□□ 0.2
HDAC3O15379 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HDAC3O15379 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
HDAC3O15379 NSUN5P1-202ENST00000421140 1535 ntBASIC16.31■□□□□ 0.2
HDAC3O15379 NSUN5P2-203ENST00000457352 1529 ntBASIC16.31■□□□□ 0.2
HDAC3O15379 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HDAC3O15379 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC16.31■□□□□ 0.2
HDAC3O15379 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC16.31■□□□□ 0.2
HDAC3O15379 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
HDAC3O15379 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HDAC3O15379 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HDAC3O15379 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC16.31■□□□□ 0.2
HDAC3O15379 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HDAC3O15379 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
HDAC3O15379 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
HDAC3O15379 TLE1-202ENST00000376484 666 ntTSL 3 BASIC16.31■□□□□ 0.2
HDAC3O15379 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC16.31■□□□□ 0.2
HDAC3O15379 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HDAC3O15379 KRT17P6-201ENST00000453795 1220 ntBASIC16.31■□□□□ 0.2
HDAC3O15379 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
HDAC3O15379 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HDAC3O15379 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC16.31■□□□□ 0.2
HDAC3O15379 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC16.31■□□□□ 0.2
HDAC3O15379 AC114341.1-201ENST00000618070 349 ntBASIC16.31■□□□□ 0.2
HDAC3O15379 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC16.31■□□□□ 0.2
HDAC3O15379 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HDAC3O15379 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HDAC3O15379 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
HDAC3O15379 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
HDAC3O15379 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
HDAC3O15379 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HDAC3O15379 MST1L-201ENST00000442552 2185 ntBASIC16.31■□□□□ 0.2
HDAC3O15379 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
HDAC3O15379 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HDAC3O15379 AL031731.1-201ENST00000642131 2094 ntBASIC16.31■□□□□ 0.2
HDAC3O15379 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
HDAC3O15379 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HDAC3O15379 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
HDAC3O15379 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HDAC3O15379 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC16.31■□□□□ 0.2
HDAC3O15379 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC16.3■□□□□ 0.2
HDAC3O15379 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
HDAC3O15379 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HDAC3O15379 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HDAC3O15379 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC16.3■□□□□ 0.2
HDAC3O15379 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC16.3■□□□□ 0.2
HDAC3O15379 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC16.3■□□□□ 0.2
HDAC3O15379 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HDAC3O15379 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC16.3■□□□□ 0.2
HDAC3O15379 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC16.3■□□□□ 0.2
HDAC3O15379 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HDAC3O15379 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HDAC3O15379 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
HDAC3O15379 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC16.3■□□□□ 0.2
HDAC3O15379 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
HDAC3O15379 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HDAC3O15379 KRT18P1-202ENST00000452408 1331 ntBASIC16.3■□□□□ 0.2
HDAC3O15379 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HDAC3O15379 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC16.3■□□□□ 0.2
HDAC3O15379 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
HDAC3O15379 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HDAC3O15379 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC16.3■□□□□ 0.2
HDAC3O15379 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
HDAC3O15379 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HDAC3O15379 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
HDAC3O15379 PPIH-202ENST00000372549 327 ntTSL 3 BASIC16.3■□□□□ 0.2
HDAC3O15379 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
HDAC3O15379 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HDAC3O15379 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
HDAC3O15379 DRAXINP1-201ENST00000437611 948 ntBASIC16.3■□□□□ 0.2
HDAC3O15379 DUX4L26-201ENST00000489078 1255 ntBASIC16.3■□□□□ 0.2
HDAC3O15379 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC16.3■□□□□ 0.2
HDAC3O15379 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC16.3■□□□□ 0.2
HDAC3O15379 PPOX-219ENST00000544598 813 ntTSL 2 BASIC16.3■□□□□ 0.2
HDAC3O15379 CYB561-217ENST00000582997 877 ntTSL 5 BASIC16.3■□□□□ 0.2
HDAC3O15379 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC16.3■□□□□ 0.2
HDAC3O15379 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC16.3■□□□□ 0.2
HDAC3O15379 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
HDAC3O15379 AL353135.1-201ENST00000606729 504 ntBASIC16.3■□□□□ 0.2
HDAC3O15379 AC066615.1-201ENST00000640911 628 ntBASIC16.3■□□□□ 0.2
HDAC3O15379 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms