Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC16.13■□□□□ 0.17
SLC28A1O00337 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
SLC28A1O00337 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SLC28A1O00337 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
SLC28A1O00337 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
SLC28A1O00337 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
SLC28A1O00337 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
SLC28A1O00337 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC28A1O00337 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC16.12■□□□□ 0.17
SLC28A1O00337 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC28A1O00337 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC28A1O00337 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SLC28A1O00337 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC16.12■□□□□ 0.17
SLC28A1O00337 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC16.12■□□□□ 0.17
SLC28A1O00337 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC28A1O00337 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
SLC28A1O00337 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC16.12■□□□□ 0.17
SLC28A1O00337 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SLC28A1O00337 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC28A1O00337 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SLC28A1O00337 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC28A1O00337 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC28A1O00337 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC16.12■□□□□ 0.17
SLC28A1O00337 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC16.12■□□□□ 0.17
SLC28A1O00337 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC28A1O00337 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC28A1O00337 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC16.12■□□□□ 0.17
SLC28A1O00337 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC16.12■□□□□ 0.17
SLC28A1O00337 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC16.12■□□□□ 0.17
SLC28A1O00337 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC16.12■□□□□ 0.17
SLC28A1O00337 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SLC28A1O00337 IRF8-202ENST00000562492 946 ntTSL 3 BASIC16.12■□□□□ 0.17
SLC28A1O00337 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC16.12■□□□□ 0.17
SLC28A1O00337 AC006557.2-201ENST00000592985 1240 ntBASIC16.12■□□□□ 0.17
SLC28A1O00337 LINC01711-201ENST00000598340 967 ntBASIC16.12■□□□□ 0.17
SLC28A1O00337 SIGLEC29P-201ENST00000599873 1114 ntBASIC16.12■□□□□ 0.17
SLC28A1O00337 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC16.12■□□□□ 0.17
SLC28A1O00337 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC16.12■□□□□ 0.17
SLC28A1O00337 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC16.12■□□□□ 0.17
SLC28A1O00337 REXO1L6P-202ENST00000619970 1078 ntBASIC16.12■□□□□ 0.17
SLC28A1O00337 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.12■□□□□ 0.17
SLC28A1O00337 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC28A1O00337 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
SLC28A1O00337 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC16.12■□□□□ 0.17
SLC28A1O00337 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC16.12■□□□□ 0.17
SLC28A1O00337 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC28A1O00337 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC16.12■□□□□ 0.17
SLC28A1O00337 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC28A1O00337 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SLC28A1O00337 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC28A1O00337 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SLC28A1O00337 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC28A1O00337 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC16.12■□□□□ 0.17
SLC28A1O00337 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC16.12■□□□□ 0.17
SLC28A1O00337 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC28A1O00337 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
SLC28A1O00337 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC28A1O00337 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
SLC28A1O00337 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SLC28A1O00337 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
SLC28A1O00337 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SLC28A1O00337 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
SLC28A1O00337 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC16.11■□□□□ 0.17
SLC28A1O00337 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
SLC28A1O00337 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC16.11■□□□□ 0.17
SLC28A1O00337 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC16.11■□□□□ 0.17
SLC28A1O00337 AC005052.1-201ENST00000625181 2492 ntBASIC16.11■□□□□ 0.17
SLC28A1O00337 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SLC28A1O00337 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SLC28A1O00337 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC16.11■□□□□ 0.17
SLC28A1O00337 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SLC28A1O00337 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC16.11■□□□□ 0.17
SLC28A1O00337 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC16.11■□□□□ 0.17
SLC28A1O00337 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SLC28A1O00337 HARS-204ENST00000438307 1789 ntTSL 2 BASIC16.11■□□□□ 0.17
SLC28A1O00337 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SLC28A1O00337 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SLC28A1O00337 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC16.11■□□□□ 0.17
SLC28A1O00337 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
SLC28A1O00337 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC16.11■□□□□ 0.17
SLC28A1O00337 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SLC28A1O00337 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC16.11■□□□□ 0.17
SLC28A1O00337 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SLC28A1O00337 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC16.11■□□□□ 0.17
SLC28A1O00337 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC16.11■□□□□ 0.17
SLC28A1O00337 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SLC28A1O00337 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC16.11■□□□□ 0.17
SLC28A1O00337 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SLC28A1O00337 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC16.11■□□□□ 0.17
SLC28A1O00337 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC16.11■□□□□ 0.17
SLC28A1O00337 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SLC28A1O00337 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
SLC28A1O00337 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SLC28A1O00337 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC16.11■□□□□ 0.17
SLC28A1O00337 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
SLC28A1O00337 FRMD6-AS1-201ENST00000617151 2229 ntBASIC16.11■□□□□ 0.17
SLC28A1O00337 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SLC28A1O00337 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
SLC28A1O00337 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SLC28A1O00337 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms