Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL6A5A8TX70 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
COL6A5A8TX70 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC12.75□□□□□ -0.37
COL6A5A8TX70 IMPDH1P4-201ENST00000445028 1534 ntBASIC12.75□□□□□ -0.37
COL6A5A8TX70 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
COL6A5A8TX70 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
COL6A5A8TX70 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL6A5A8TX70 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL6A5A8TX70 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
COL6A5A8TX70 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
COL6A5A8TX70 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
COL6A5A8TX70 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC12.75□□□□□ -0.37
COL6A5A8TX70 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL6A5A8TX70 EEF1DP1-201ENST00000585891 896 ntBASIC12.75□□□□□ -0.37
COL6A5A8TX70 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC12.75□□□□□ -0.37
COL6A5A8TX70 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC12.75□□□□□ -0.37
COL6A5A8TX70 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC12.75□□□□□ -0.37
COL6A5A8TX70 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
COL6A5A8TX70 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC12.75□□□□□ -0.37
COL6A5A8TX70 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL6A5A8TX70 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC12.75□□□□□ -0.37
COL6A5A8TX70 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC12.75□□□□□ -0.37
COL6A5A8TX70 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
COL6A5A8TX70 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
COL6A5A8TX70 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC12.75□□□□□ -0.37
COL6A5A8TX70 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL6A5A8TX70 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL6A5A8TX70 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC12.75□□□□□ -0.37
COL6A5A8TX70 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL6A5A8TX70 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL6A5A8TX70 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
COL6A5A8TX70 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
COL6A5A8TX70 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
COL6A5A8TX70 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC12.75□□□□□ -0.37
COL6A5A8TX70 HLA-DQB2-229ENST00000411527 1059 ntBASIC12.75□□□□□ -0.37
COL6A5A8TX70 AC069218.1-201ENST00000435269 762 ntBASIC12.75□□□□□ -0.37
COL6A5A8TX70 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC12.75□□□□□ -0.37
COL6A5A8TX70 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
COL6A5A8TX70 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC12.75□□□□□ -0.37
COL6A5A8TX70 MNT-208ENST00000575394 606 ntTSL 4 BASIC12.75□□□□□ -0.37
COL6A5A8TX70 NAA38-207ENST00000576861 556 ntTSL 3 BASIC12.75□□□□□ -0.37
COL6A5A8TX70 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC12.75□□□□□ -0.37
COL6A5A8TX70 ATF5-205ENST00000600336 682 ntTSL 2 BASIC12.75□□□□□ -0.37
COL6A5A8TX70 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC12.75□□□□□ -0.37
COL6A5A8TX70 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL6A5A8TX70 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL6A5A8TX70 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL6A5A8TX70 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
COL6A5A8TX70 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL6A5A8TX70 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL6A5A8TX70 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL6A5A8TX70 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC12.74□□□□□ -0.37
COL6A5A8TX70 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL6A5A8TX70 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC12.74□□□□□ -0.37
COL6A5A8TX70 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
COL6A5A8TX70 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC12.74□□□□□ -0.37
COL6A5A8TX70 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
COL6A5A8TX70 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC12.74□□□□□ -0.37
COL6A5A8TX70 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
COL6A5A8TX70 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL6A5A8TX70 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL6A5A8TX70 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC12.74□□□□□ -0.37
COL6A5A8TX70 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
COL6A5A8TX70 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
COL6A5A8TX70 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
COL6A5A8TX70 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL6A5A8TX70 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL6A5A8TX70 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL6A5A8TX70 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC12.74□□□□□ -0.37
COL6A5A8TX70 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL6A5A8TX70 SNX21-203ENST00000372541 771 ntTSL 2 BASIC12.74□□□□□ -0.37
COL6A5A8TX70 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL6A5A8TX70 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC12.74□□□□□ -0.37
COL6A5A8TX70 IQSEC3P1-201ENST00000538799 536 ntBASIC12.74□□□□□ -0.37
COL6A5A8TX70 LARP4-220ENST00000615080 856 ntTSL 5 BASIC12.74□□□□□ -0.37
COL6A5A8TX70 AP003419.4-201ENST00000616071 517 ntBASIC12.74□□□□□ -0.37
COL6A5A8TX70 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC12.74□□□□□ -0.37
COL6A5A8TX70 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC12.73□□□□□ -0.37
COL6A5A8TX70 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC12.73□□□□□ -0.37
COL6A5A8TX70 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
COL6A5A8TX70 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL6A5A8TX70 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
COL6A5A8TX70 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL6A5A8TX70 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC12.73□□□□□ -0.37
COL6A5A8TX70 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC12.73□□□□□ -0.37
COL6A5A8TX70 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC12.73□□□□□ -0.37
COL6A5A8TX70 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL6A5A8TX70 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC12.73□□□□□ -0.37
COL6A5A8TX70 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL6A5A8TX70 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
COL6A5A8TX70 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
COL6A5A8TX70 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC12.73□□□□□ -0.37
COL6A5A8TX70 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL6A5A8TX70 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
COL6A5A8TX70 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC12.73□□□□□ -0.37
COL6A5A8TX70 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
COL6A5A8TX70 RN7SL818P-201ENST00000485099 259 ntBASIC12.73□□□□□ -0.37
COL6A5A8TX70 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC12.73□□□□□ -0.37
COL6A5A8TX70 HTATIP2-205ENST00000530266 713 ntTSL 3 BASIC12.73□□□□□ -0.37
COL6A5A8TX70 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC12.73□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms