Protein–RNA interactions for Protein: Q9Y5F3

PCDHB1, Protocadherin beta-1, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB1Q9Y5F3 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHB1Q9Y5F3 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
PCDHB1Q9Y5F3 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHB1Q9Y5F3 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC16.73■□□□□ 0.27
PCDHB1Q9Y5F3 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHB1Q9Y5F3 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHB1Q9Y5F3 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHB1Q9Y5F3 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC16.73■□□□□ 0.27
PCDHB1Q9Y5F3 MRPL20P1-201ENST00000400819 433 ntBASIC16.73■□□□□ 0.27
PCDHB1Q9Y5F3 FAM58CP-201ENST00000435741 640 ntBASIC16.73■□□□□ 0.27
PCDHB1Q9Y5F3 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHB1Q9Y5F3 HLA-J-202ENST00000469281 1241 ntBASIC16.73■□□□□ 0.27
PCDHB1Q9Y5F3 SLC25A6P2-201ENST00000497974 877 ntBASIC16.73■□□□□ 0.27
PCDHB1Q9Y5F3 POLD4-207ENST00000531239 584 ntTSL 2 BASIC16.73■□□□□ 0.27
PCDHB1Q9Y5F3 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHB1Q9Y5F3 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
PCDHB1Q9Y5F3 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC16.73■□□□□ 0.27
PCDHB1Q9Y5F3 KRT19P2-202ENST00000557173 1012 ntBASIC16.73■□□□□ 0.27
PCDHB1Q9Y5F3 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC16.73■□□□□ 0.27
PCDHB1Q9Y5F3 AC091167.2-201ENST00000579581 588 ntBASIC16.73■□□□□ 0.27
PCDHB1Q9Y5F3 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC16.73■□□□□ 0.27
PCDHB1Q9Y5F3 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC16.73■□□□□ 0.27
PCDHB1Q9Y5F3 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
PCDHB1Q9Y5F3 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.73■□□□□ 0.27
PCDHB1Q9Y5F3 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHB1Q9Y5F3 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHB1Q9Y5F3 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PCDHB1Q9Y5F3 AC129492.6-201ENST00000611383 1305 ntBASIC16.72■□□□□ 0.27
PCDHB1Q9Y5F3 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC16.72■□□□□ 0.27
PCDHB1Q9Y5F3 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PCDHB1Q9Y5F3 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
PCDHB1Q9Y5F3 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PCDHB1Q9Y5F3 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC16.72■□□□□ 0.27
PCDHB1Q9Y5F3 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
PCDHB1Q9Y5F3 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PCDHB1Q9Y5F3 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.72■□□□□ 0.27
PCDHB1Q9Y5F3 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
PCDHB1Q9Y5F3 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PCDHB1Q9Y5F3 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC16.72■□□□□ 0.27
PCDHB1Q9Y5F3 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
PCDHB1Q9Y5F3 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PCDHB1Q9Y5F3 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PCDHB1Q9Y5F3 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
PCDHB1Q9Y5F3 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC16.72■□□□□ 0.27
PCDHB1Q9Y5F3 TSEN15P1-201ENST00000423257 515 ntBASIC16.72■□□□□ 0.27
PCDHB1Q9Y5F3 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC16.72■□□□□ 0.27
PCDHB1Q9Y5F3 SMN2-210ENST00000511812 867 ntTSL 2 BASIC16.72■□□□□ 0.27
PCDHB1Q9Y5F3 CIPC-205ENST00000555437 566 ntTSL 3 BASIC16.72■□□□□ 0.27
PCDHB1Q9Y5F3 RIN3-211ENST00000557762 517 ntTSL 3 BASIC16.72■□□□□ 0.27
PCDHB1Q9Y5F3 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
PCDHB1Q9Y5F3 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC16.72■□□□□ 0.27
PCDHB1Q9Y5F3 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC16.72■□□□□ 0.27
PCDHB1Q9Y5F3 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC16.72■□□□□ 0.27
PCDHB1Q9Y5F3 AQP6-205ENST00000618286 829 ntTSL 5 BASIC16.72■□□□□ 0.27
PCDHB1Q9Y5F3 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
PCDHB1Q9Y5F3 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC16.72■□□□□ 0.27
PCDHB1Q9Y5F3 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PCDHB1Q9Y5F3 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
PCDHB1Q9Y5F3 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC16.72■□□□□ 0.27
PCDHB1Q9Y5F3 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PCDHB1Q9Y5F3 PC-214ENST00000628663 1470 ntTSL 5 BASIC16.72■□□□□ 0.27
PCDHB1Q9Y5F3 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
PCDHB1Q9Y5F3 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC16.72■□□□□ 0.27
PCDHB1Q9Y5F3 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC16.72■□□□□ 0.27
PCDHB1Q9Y5F3 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
PCDHB1Q9Y5F3 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
PCDHB1Q9Y5F3 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC16.72■□□□□ 0.27
PCDHB1Q9Y5F3 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
PCDHB1Q9Y5F3 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC16.72■□□□□ 0.27
PCDHB1Q9Y5F3 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PCDHB1Q9Y5F3 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PCDHB1Q9Y5F3 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PCDHB1Q9Y5F3 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PCDHB1Q9Y5F3 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC16.71■□□□□ 0.27
PCDHB1Q9Y5F3 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
PCDHB1Q9Y5F3 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC16.71■□□□□ 0.27
PCDHB1Q9Y5F3 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PCDHB1Q9Y5F3 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
PCDHB1Q9Y5F3 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PCDHB1Q9Y5F3 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PCDHB1Q9Y5F3 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
PCDHB1Q9Y5F3 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
PCDHB1Q9Y5F3 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC16.71■□□□□ 0.27
PCDHB1Q9Y5F3 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
PCDHB1Q9Y5F3 AL139400.1-201ENST00000366220 510 ntBASIC16.71■□□□□ 0.27
PCDHB1Q9Y5F3 AL035633.1-201ENST00000406139 838 ntBASIC16.71■□□□□ 0.27
PCDHB1Q9Y5F3 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
PCDHB1Q9Y5F3 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC16.71■□□□□ 0.27
PCDHB1Q9Y5F3 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC16.71■□□□□ 0.27
PCDHB1Q9Y5F3 MPDU1-223ENST00000582151 728 ntBASIC16.71■□□□□ 0.27
PCDHB1Q9Y5F3 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC16.71■□□□□ 0.27
PCDHB1Q9Y5F3 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PCDHB1Q9Y5F3 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC16.71■□□□□ 0.27
PCDHB1Q9Y5F3 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PCDHB1Q9Y5F3 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PCDHB1Q9Y5F3 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PCDHB1Q9Y5F3 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PCDHB1Q9Y5F3 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PCDHB1Q9Y5F3 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC16.71■□□□□ 0.27
PCDHB1Q9Y5F3 AL603756.1-201ENST00000606511 2163 ntBASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms