Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CHMP3Q9Y3E7 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
CHMP3Q9Y3E7 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC20.89■□□□□ 0.94
CHMP3Q9Y3E7 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
CHMP3Q9Y3E7 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC20.89■□□□□ 0.94
CHMP3Q9Y3E7 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC20.89■□□□□ 0.94
CHMP3Q9Y3E7 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.94
CHMP3Q9Y3E7 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CHMP3Q9Y3E7 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CHMP3Q9Y3E7 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
CHMP3Q9Y3E7 TUBB8P12-201ENST00000308911 1335 ntBASIC20.89■□□□□ 0.93
CHMP3Q9Y3E7 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC20.89■□□□□ 0.93
CHMP3Q9Y3E7 TUBB7P-202ENST00000428444 1305 ntBASIC20.89■□□□□ 0.93
CHMP3Q9Y3E7 TUBB8P7-204ENST00000567960 1332 ntBASIC20.89■□□□□ 0.93
CHMP3Q9Y3E7 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CHMP3Q9Y3E7 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CHMP3Q9Y3E7 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CHMP3Q9Y3E7 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CHMP3Q9Y3E7 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CHMP3Q9Y3E7 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CHMP3Q9Y3E7 DAD1-205ENST00000543337 501 ntTSL 3 BASIC20.89■□□□□ 0.93
CHMP3Q9Y3E7 AC243562.1-201ENST00000560672 389 ntBASIC20.89■□□□□ 0.93
CHMP3Q9Y3E7 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC20.89■□□□□ 0.93
CHMP3Q9Y3E7 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC20.89■□□□□ 0.93
CHMP3Q9Y3E7 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CHMP3Q9Y3E7 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC20.89■□□□□ 0.93
CHMP3Q9Y3E7 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC20.89■□□□□ 0.93
CHMP3Q9Y3E7 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC20.89■□□□□ 0.93
CHMP3Q9Y3E7 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CHMP3Q9Y3E7 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CHMP3Q9Y3E7 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CHMP3Q9Y3E7 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CHMP3Q9Y3E7 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CHMP3Q9Y3E7 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CHMP3Q9Y3E7 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CHMP3Q9Y3E7 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CHMP3Q9Y3E7 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC20.89■□□□□ 0.93
CHMP3Q9Y3E7 AC060834.1-201ENST00000443027 2032 ntBASIC20.88■□□□□ 0.93
CHMP3Q9Y3E7 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CHMP3Q9Y3E7 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CHMP3Q9Y3E7 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC20.88■□□□□ 0.93
CHMP3Q9Y3E7 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CHMP3Q9Y3E7 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC20.88■□□□□ 0.93
CHMP3Q9Y3E7 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
CHMP3Q9Y3E7 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CHMP3Q9Y3E7 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CHMP3Q9Y3E7 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CHMP3Q9Y3E7 AL627223.1-201ENST00000416693 442 ntBASIC20.88■□□□□ 0.93
CHMP3Q9Y3E7 AC092474.2-201ENST00000424288 719 ntBASIC20.88■□□□□ 0.93
CHMP3Q9Y3E7 STARD13-205ENST00000439831 945 ntTSL 2 BASIC20.88■□□□□ 0.93
CHMP3Q9Y3E7 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC20.88■□□□□ 0.93
CHMP3Q9Y3E7 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC20.88■□□□□ 0.93
CHMP3Q9Y3E7 AC109635.5-201ENST00000533593 962 ntBASIC20.88■□□□□ 0.93
CHMP3Q9Y3E7 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC20.88■□□□□ 0.93
CHMP3Q9Y3E7 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
CHMP3Q9Y3E7 AC093520.2-201ENST00000561830 333 ntBASIC20.88■□□□□ 0.93
CHMP3Q9Y3E7 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
CHMP3Q9Y3E7 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
CHMP3Q9Y3E7 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
CHMP3Q9Y3E7 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
CHMP3Q9Y3E7 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
CHMP3Q9Y3E7 PCDHB17P-201ENST00000539533 2393 ntBASIC20.88■□□□□ 0.93
CHMP3Q9Y3E7 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CHMP3Q9Y3E7 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
CHMP3Q9Y3E7 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CHMP3Q9Y3E7 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC20.88■□□□□ 0.93
CHMP3Q9Y3E7 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
CHMP3Q9Y3E7 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
CHMP3Q9Y3E7 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CHMP3Q9Y3E7 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
CHMP3Q9Y3E7 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC20.87■□□□□ 0.93
CHMP3Q9Y3E7 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CHMP3Q9Y3E7 SLC9A3P2-201ENST00000447821 2021 ntBASIC20.87■□□□□ 0.93
CHMP3Q9Y3E7 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC20.87■□□□□ 0.93
CHMP3Q9Y3E7 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
CHMP3Q9Y3E7 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CHMP3Q9Y3E7 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CHMP3Q9Y3E7 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
CHMP3Q9Y3E7 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
CHMP3Q9Y3E7 AL645939.2-201ENST00000427340 991 ntBASIC20.87■□□□□ 0.93
CHMP3Q9Y3E7 MIR4492-201ENST00000581627 80 ntBASIC20.87■□□□□ 0.93
CHMP3Q9Y3E7 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC20.87■□□□□ 0.93
CHMP3Q9Y3E7 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC20.87■□□□□ 0.93
CHMP3Q9Y3E7 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CHMP3Q9Y3E7 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CHMP3Q9Y3E7 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CHMP3Q9Y3E7 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC20.87■□□□□ 0.93
CHMP3Q9Y3E7 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC20.87■□□□□ 0.93
CHMP3Q9Y3E7 AL645608.8-201ENST00000606034 2086 ntBASIC20.87■□□□□ 0.93
CHMP3Q9Y3E7 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CHMP3Q9Y3E7 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CHMP3Q9Y3E7 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC20.86■□□□□ 0.93
CHMP3Q9Y3E7 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC20.86■□□□□ 0.93
CHMP3Q9Y3E7 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC20.86■□□□□ 0.93
CHMP3Q9Y3E7 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CHMP3Q9Y3E7 AKAP8P1-201ENST00000434743 1349 ntBASIC20.86■□□□□ 0.93
CHMP3Q9Y3E7 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CHMP3Q9Y3E7 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CHMP3Q9Y3E7 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
CHMP3Q9Y3E7 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 91.6 ms