Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
CCDC39Q9UFE4 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
CCDC39Q9UFE4 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC19.45■□□□□ 0.7
CCDC39Q9UFE4 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC39Q9UFE4 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC19.45■□□□□ 0.7
CCDC39Q9UFE4 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC39Q9UFE4 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
CCDC39Q9UFE4 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC39Q9UFE4 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC19.44■□□□□ 0.7
CCDC39Q9UFE4 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC39Q9UFE4 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
CCDC39Q9UFE4 AC148477.5-201ENST00000625164 1645 ntBASIC19.44■□□□□ 0.7
CCDC39Q9UFE4 AC079776.2-201ENST00000641154 1609 ntBASIC19.44■□□□□ 0.7
CCDC39Q9UFE4 AP005117.1-201ENST00000584346 1413 ntBASIC19.44■□□□□ 0.7
CCDC39Q9UFE4 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC39Q9UFE4 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC19.44■□□□□ 0.7
CCDC39Q9UFE4 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC39Q9UFE4 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
CCDC39Q9UFE4 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC39Q9UFE4 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC39Q9UFE4 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC39Q9UFE4 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC39Q9UFE4 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC19.44■□□□□ 0.7
CCDC39Q9UFE4 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC19.44■□□□□ 0.7
CCDC39Q9UFE4 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC19.44■□□□□ 0.7
CCDC39Q9UFE4 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC19.44■□□□□ 0.7
CCDC39Q9UFE4 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC19.44■□□□□ 0.7
CCDC39Q9UFE4 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC19.44■□□□□ 0.7
CCDC39Q9UFE4 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC39Q9UFE4 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
CCDC39Q9UFE4 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC39Q9UFE4 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC19.44■□□□□ 0.7
CCDC39Q9UFE4 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC19.44■□□□□ 0.7
CCDC39Q9UFE4 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC19.44■□□□□ 0.7
CCDC39Q9UFE4 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
CCDC39Q9UFE4 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC19.44■□□□□ 0.7
CCDC39Q9UFE4 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC39Q9UFE4 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC39Q9UFE4 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC39Q9UFE4 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC39Q9UFE4 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC39Q9UFE4 PKD1P5-201ENST00000532415 10291 ntBASIC19.43■□□□□ 0.7
CCDC39Q9UFE4 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC39Q9UFE4 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC19.43■□□□□ 0.7
CCDC39Q9UFE4 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
CCDC39Q9UFE4 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC39Q9UFE4 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC39Q9UFE4 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC39Q9UFE4 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC39Q9UFE4 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC39Q9UFE4 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC19.43■□□□□ 0.7
CCDC39Q9UFE4 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC19.43■□□□□ 0.7
CCDC39Q9UFE4 AC073592.4-201ENST00000623827 446 ntBASIC19.43■□□□□ 0.7
CCDC39Q9UFE4 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC19.43■□□□□ 0.7
CCDC39Q9UFE4 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC39Q9UFE4 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC19.43■□□□□ 0.7
CCDC39Q9UFE4 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC39Q9UFE4 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC39Q9UFE4 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC39Q9UFE4 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC39Q9UFE4 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC39Q9UFE4 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC19.43■□□□□ 0.7
CCDC39Q9UFE4 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC19.43■□□□□ 0.7
CCDC39Q9UFE4 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
CCDC39Q9UFE4 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC39Q9UFE4 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC39Q9UFE4 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC39Q9UFE4 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC39Q9UFE4 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC39Q9UFE4 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC39Q9UFE4 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC19.42■□□□□ 0.7
CCDC39Q9UFE4 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC39Q9UFE4 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC39Q9UFE4 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC39Q9UFE4 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC19.42■□□□□ 0.7
CCDC39Q9UFE4 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC39Q9UFE4 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC39Q9UFE4 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
CCDC39Q9UFE4 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC19.42■□□□□ 0.7
CCDC39Q9UFE4 ACTG1P4-201ENST00000425123 1122 ntBASIC19.42■□□□□ 0.7
CCDC39Q9UFE4 NMU-205ENST00000511469 756 ntTSL 3 BASIC19.42■□□□□ 0.7
CCDC39Q9UFE4 AC124947.2-201ENST00000547118 1133 ntBASIC19.42■□□□□ 0.7
CCDC39Q9UFE4 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC19.42■□□□□ 0.7
CCDC39Q9UFE4 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC19.42■□□□□ 0.7
CCDC39Q9UFE4 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC39Q9UFE4 AP001269.4-201ENST00000609611 512 ntBASIC19.42■□□□□ 0.7
CCDC39Q9UFE4 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC39Q9UFE4 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC19.42■□□□□ 0.7
CCDC39Q9UFE4 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC39Q9UFE4 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC39Q9UFE4 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC39Q9UFE4 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC19.42■□□□□ 0.7
CCDC39Q9UFE4 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC39Q9UFE4 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC19.42■□□□□ 0.7
CCDC39Q9UFE4 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC39Q9UFE4 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
CCDC39Q9UFE4 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
CCDC39Q9UFE4 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
CCDC39Q9UFE4 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC39Q9UFE4 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms