Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS54Q9P1Q0 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC19.25■□□□□ 0.67
VPS54Q9P1Q0 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC19.25■□□□□ 0.67
VPS54Q9P1Q0 HNRNPA1P28-201ENST00000424481 961 ntBASIC19.25■□□□□ 0.67
VPS54Q9P1Q0 WDR53-204ENST00000433160 887 ntTSL 5 BASIC19.25■□□□□ 0.67
VPS54Q9P1Q0 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC19.25■□□□□ 0.67
VPS54Q9P1Q0 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC19.25■□□□□ 0.67
VPS54Q9P1Q0 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
VPS54Q9P1Q0 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC19.25■□□□□ 0.67
VPS54Q9P1Q0 AL031055.1-201ENST00000606362 631 ntBASIC19.25■□□□□ 0.67
VPS54Q9P1Q0 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC19.25■□□□□ 0.67
VPS54Q9P1Q0 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VPS54Q9P1Q0 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS54Q9P1Q0 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS54Q9P1Q0 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VPS54Q9P1Q0 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS54Q9P1Q0 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC19.25■□□□□ 0.67
VPS54Q9P1Q0 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VPS54Q9P1Q0 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC19.25■□□□□ 0.67
VPS54Q9P1Q0 GGT4P-201ENST00000623672 1708 ntBASIC19.25■□□□□ 0.67
VPS54Q9P1Q0 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS54Q9P1Q0 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC19.25■□□□□ 0.67
VPS54Q9P1Q0 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
VPS54Q9P1Q0 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS54Q9P1Q0 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC19.24■□□□□ 0.67
VPS54Q9P1Q0 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
VPS54Q9P1Q0 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS54Q9P1Q0 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VPS54Q9P1Q0 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC19.24■□□□□ 0.67
VPS54Q9P1Q0 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
VPS54Q9P1Q0 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS54Q9P1Q0 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS54Q9P1Q0 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
VPS54Q9P1Q0 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC19.24■□□□□ 0.67
VPS54Q9P1Q0 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC19.24■□□□□ 0.67
VPS54Q9P1Q0 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VPS54Q9P1Q0 FABP5-202ENST00000396359 986 ntTSL 5 BASIC19.24■□□□□ 0.67
VPS54Q9P1Q0 STARD13-205ENST00000439831 945 ntTSL 2 BASIC19.24■□□□□ 0.67
VPS54Q9P1Q0 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC19.24■□□□□ 0.67
VPS54Q9P1Q0 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC19.24■□□□□ 0.67
VPS54Q9P1Q0 SMN2-210ENST00000511812 867 ntTSL 2 BASIC19.24■□□□□ 0.67
VPS54Q9P1Q0 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC19.24■□□□□ 0.67
VPS54Q9P1Q0 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC19.24■□□□□ 0.67
VPS54Q9P1Q0 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC19.24■□□□□ 0.67
VPS54Q9P1Q0 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC19.24■□□□□ 0.67
VPS54Q9P1Q0 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
VPS54Q9P1Q0 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS54Q9P1Q0 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS54Q9P1Q0 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS54Q9P1Q0 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS54Q9P1Q0 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC19.24■□□□□ 0.67
VPS54Q9P1Q0 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC19.24■□□□□ 0.67
VPS54Q9P1Q0 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS54Q9P1Q0 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC19.24■□□□□ 0.67
VPS54Q9P1Q0 AL662844.4-201ENST00000606367 2838 ntBASIC19.24■□□□□ 0.67
VPS54Q9P1Q0 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC19.24■□□□□ 0.67
VPS54Q9P1Q0 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS54Q9P1Q0 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
VPS54Q9P1Q0 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC19.23■□□□□ 0.67
VPS54Q9P1Q0 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS54Q9P1Q0 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC19.23■□□□□ 0.67
VPS54Q9P1Q0 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
VPS54Q9P1Q0 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VPS54Q9P1Q0 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VPS54Q9P1Q0 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS54Q9P1Q0 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VPS54Q9P1Q0 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VPS54Q9P1Q0 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS54Q9P1Q0 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC19.23■□□□□ 0.67
VPS54Q9P1Q0 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VPS54Q9P1Q0 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC19.23■□□□□ 0.67
VPS54Q9P1Q0 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC19.23■□□□□ 0.67
VPS54Q9P1Q0 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
VPS54Q9P1Q0 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS54Q9P1Q0 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC19.23■□□□□ 0.67
VPS54Q9P1Q0 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC19.23■□□□□ 0.67
VPS54Q9P1Q0 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
VPS54Q9P1Q0 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VPS54Q9P1Q0 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS54Q9P1Q0 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VPS54Q9P1Q0 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC19.23■□□□□ 0.67
VPS54Q9P1Q0 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC19.23■□□□□ 0.67
VPS54Q9P1Q0 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC19.23■□□□□ 0.67
VPS54Q9P1Q0 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS54Q9P1Q0 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC19.22■□□□□ 0.67
VPS54Q9P1Q0 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VPS54Q9P1Q0 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS54Q9P1Q0 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
VPS54Q9P1Q0 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
VPS54Q9P1Q0 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
VPS54Q9P1Q0 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
VPS54Q9P1Q0 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
VPS54Q9P1Q0 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
VPS54Q9P1Q0 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
VPS54Q9P1Q0 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
VPS54Q9P1Q0 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
VPS54Q9P1Q0 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC19.22■□□□□ 0.67
VPS54Q9P1Q0 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC19.22■□□□□ 0.67
VPS54Q9P1Q0 AC074386.1-202ENST00000463561 864 ntBASIC19.22■□□□□ 0.67
VPS54Q9P1Q0 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 86.5 ms