Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC21.27■■□□□ 1
CHMP4AQ9BY43 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC21.27■■□□□ 1
CHMP4AQ9BY43 AC069335.1-201ENST00000489972 472 ntBASIC21.27■■□□□ 1
CHMP4AQ9BY43 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
CHMP4AQ9BY43 AL512356.2-201ENST00000546955 174 ntBASIC21.27■■□□□ 1
CHMP4AQ9BY43 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC21.27■■□□□ 1
CHMP4AQ9BY43 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC21.27■■□□□ 1
CHMP4AQ9BY43 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC21.27■■□□□ 1
CHMP4AQ9BY43 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
CHMP4AQ9BY43 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
CHMP4AQ9BY43 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC21.27■■□□□ 1
CHMP4AQ9BY43 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC21.27■■□□□ 1
CHMP4AQ9BY43 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC21.27■■□□□ 1
CHMP4AQ9BY43 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CHMP4AQ9BY43 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
CHMP4AQ9BY43 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC21.27■■□□□ 1
CHMP4AQ9BY43 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC21.27■□□□□ 0.99
CHMP4AQ9BY43 AL671710.1-201ENST00000610245 2349 ntBASIC21.27■□□□□ 0.99
CHMP4AQ9BY43 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
CHMP4AQ9BY43 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC21.27■□□□□ 0.99
CHMP4AQ9BY43 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
CHMP4AQ9BY43 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CHMP4AQ9BY43 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC21.26■□□□□ 0.99
CHMP4AQ9BY43 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC21.26■□□□□ 0.99
CHMP4AQ9BY43 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC21.26■□□□□ 0.99
CHMP4AQ9BY43 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC21.26■□□□□ 0.99
CHMP4AQ9BY43 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CHMP4AQ9BY43 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CHMP4AQ9BY43 GOLGA6L17P-202ENST00000614358 1398 ntBASIC21.26■□□□□ 0.99
CHMP4AQ9BY43 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
CHMP4AQ9BY43 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CHMP4AQ9BY43 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CHMP4AQ9BY43 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CHMP4AQ9BY43 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CHMP4AQ9BY43 GGCT-205ENST00000409436 954 ntTSL 3 BASIC21.26■□□□□ 0.99
CHMP4AQ9BY43 TSEN15P1-201ENST00000423257 515 ntBASIC21.26■□□□□ 0.99
CHMP4AQ9BY43 KRT18P32-201ENST00000424695 1287 ntBASIC21.26■□□□□ 0.99
CHMP4AQ9BY43 PON3-203ENST00000427422 894 ntTSL 3 BASIC21.26■□□□□ 0.99
CHMP4AQ9BY43 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC21.26■□□□□ 0.99
CHMP4AQ9BY43 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CHMP4AQ9BY43 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC21.26■□□□□ 0.99
CHMP4AQ9BY43 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC21.26■□□□□ 0.99
CHMP4AQ9BY43 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC21.26■□□□□ 0.99
CHMP4AQ9BY43 SSH2-211ENST00000590153 570 ntTSL 4 BASIC21.26■□□□□ 0.99
CHMP4AQ9BY43 NKG7-205ENST00000600427 520 ntTSL 3 BASIC21.26■□□□□ 0.99
CHMP4AQ9BY43 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC21.26■□□□□ 0.99
CHMP4AQ9BY43 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CHMP4AQ9BY43 AC105020.1-201ENST00000435356 2205 ntBASIC21.26■□□□□ 0.99
CHMP4AQ9BY43 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CHMP4AQ9BY43 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CHMP4AQ9BY43 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC21.26■□□□□ 0.99
CHMP4AQ9BY43 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CHMP4AQ9BY43 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC21.26■□□□□ 0.99
CHMP4AQ9BY43 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CHMP4AQ9BY43 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CHMP4AQ9BY43 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC21.25■□□□□ 0.99
CHMP4AQ9BY43 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CHMP4AQ9BY43 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC21.25■□□□□ 0.99
CHMP4AQ9BY43 F11R-206ENST00000621309 4770 ntTSL 5 BASIC21.25■□□□□ 0.99
CHMP4AQ9BY43 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CHMP4AQ9BY43 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CHMP4AQ9BY43 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CHMP4AQ9BY43 RPL30-202ENST00000396070 440 ntTSL 2 BASIC21.25■□□□□ 0.99
CHMP4AQ9BY43 PMS2P2-201ENST00000425039 1128 ntBASIC21.25■□□□□ 0.99
CHMP4AQ9BY43 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC21.25■□□□□ 0.99
CHMP4AQ9BY43 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CHMP4AQ9BY43 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC21.25■□□□□ 0.99
CHMP4AQ9BY43 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
CHMP4AQ9BY43 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC21.25■□□□□ 0.99
CHMP4AQ9BY43 AC027612.4-201ENST00000605371 583 ntBASIC21.25■□□□□ 0.99
CHMP4AQ9BY43 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
CHMP4AQ9BY43 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
CHMP4AQ9BY43 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC21.25■□□□□ 0.99
CHMP4AQ9BY43 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
CHMP4AQ9BY43 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
CHMP4AQ9BY43 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CHMP4AQ9BY43 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC21.25■□□□□ 0.99
CHMP4AQ9BY43 AL512652.2-201ENST00000625156 1716 ntBASIC21.24■□□□□ 0.99
CHMP4AQ9BY43 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CHMP4AQ9BY43 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CHMP4AQ9BY43 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
CHMP4AQ9BY43 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CHMP4AQ9BY43 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CHMP4AQ9BY43 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CHMP4AQ9BY43 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
CHMP4AQ9BY43 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC21.24■□□□□ 0.99
CHMP4AQ9BY43 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC21.24■□□□□ 0.99
CHMP4AQ9BY43 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC21.24■□□□□ 0.99
CHMP4AQ9BY43 PRYP6-201ENST00000514804 343 ntBASIC21.24■□□□□ 0.99
CHMP4AQ9BY43 DAD1-205ENST00000543337 501 ntTSL 3 BASIC21.24■□□□□ 0.99
CHMP4AQ9BY43 AP000842.3-202ENST00000569238 1080 ntBASIC21.24■□□□□ 0.99
CHMP4AQ9BY43 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC21.24■□□□□ 0.99
CHMP4AQ9BY43 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC21.24■□□□□ 0.99
CHMP4AQ9BY43 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
CHMP4AQ9BY43 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
CHMP4AQ9BY43 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CHMP4AQ9BY43 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CHMP4AQ9BY43 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
CHMP4AQ9BY43 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
CHMP4AQ9BY43 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC21.24■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms