Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC16.62■□□□□ 0.25
VPS35Q96QK1 DNAJB3-201ENST00000446806 729 ntBASIC16.62■□□□□ 0.25
VPS35Q96QK1 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC16.62■□□□□ 0.25
VPS35Q96QK1 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC16.62■□□□□ 0.25
VPS35Q96QK1 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC16.62■□□□□ 0.25
VPS35Q96QK1 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC16.62■□□□□ 0.25
VPS35Q96QK1 U1.21-201ENST00000580816 167 ntBASIC16.62■□□□□ 0.25
VPS35Q96QK1 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC16.62■□□□□ 0.25
VPS35Q96QK1 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS35Q96QK1 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS35Q96QK1 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS35Q96QK1 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC16.62■□□□□ 0.25
VPS35Q96QK1 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS35Q96QK1 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS35Q96QK1 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS35Q96QK1 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS35Q96QK1 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS35Q96QK1 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS35Q96QK1 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC16.61■□□□□ 0.25
VPS35Q96QK1 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS35Q96QK1 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VPS35Q96QK1 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
VPS35Q96QK1 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VPS35Q96QK1 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VPS35Q96QK1 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS35Q96QK1 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
VPS35Q96QK1 AD000864.1-201ENST00000624076 2295 ntBASIC16.61■□□□□ 0.25
VPS35Q96QK1 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS35Q96QK1 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS35Q96QK1 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VPS35Q96QK1 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VPS35Q96QK1 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS35Q96QK1 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS35Q96QK1 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC16.61■□□□□ 0.25
VPS35Q96QK1 AC109635.5-201ENST00000533593 962 ntBASIC16.61■□□□□ 0.25
VPS35Q96QK1 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
VPS35Q96QK1 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS35Q96QK1 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
VPS35Q96QK1 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VPS35Q96QK1 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC16.61■□□□□ 0.25
VPS35Q96QK1 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC16.61■□□□□ 0.25
VPS35Q96QK1 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS35Q96QK1 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS35Q96QK1 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS35Q96QK1 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.61■□□□□ 0.25
VPS35Q96QK1 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS35Q96QK1 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VPS35Q96QK1 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
VPS35Q96QK1 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VPS35Q96QK1 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS35Q96QK1 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS35Q96QK1 SLC9A3P2-201ENST00000447821 2021 ntBASIC16.6■□□□□ 0.25
VPS35Q96QK1 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC16.6■□□□□ 0.25
VPS35Q96QK1 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VPS35Q96QK1 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.6■□□□□ 0.25
VPS35Q96QK1 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS35Q96QK1 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS35Q96QK1 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS35Q96QK1 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC16.6■□□□□ 0.25
VPS35Q96QK1 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS35Q96QK1 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS35Q96QK1 SNX33P1-201ENST00000592116 1762 ntBASIC16.6■□□□□ 0.25
VPS35Q96QK1 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS35Q96QK1 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS35Q96QK1 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC16.6■□□□□ 0.25
VPS35Q96QK1 PMS2P4-201ENST00000412466 1052 ntBASIC16.6■□□□□ 0.25
VPS35Q96QK1 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
VPS35Q96QK1 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC16.6■□□□□ 0.25
VPS35Q96QK1 WDR53-204ENST00000433160 887 ntTSL 5 BASIC16.6■□□□□ 0.25
VPS35Q96QK1 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC16.6■□□□□ 0.25
VPS35Q96QK1 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC16.6■□□□□ 0.25
VPS35Q96QK1 AP002472.1-201ENST00000577490 586 ntBASIC16.6■□□□□ 0.25
VPS35Q96QK1 AL031055.1-201ENST00000606362 631 ntBASIC16.6■□□□□ 0.25
VPS35Q96QK1 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC16.6■□□□□ 0.25
VPS35Q96QK1 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC16.6■□□□□ 0.25
VPS35Q96QK1 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
VPS35Q96QK1 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
VPS35Q96QK1 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS35Q96QK1 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
VPS35Q96QK1 AC084018.2-201ENST00000613093 2607 ntBASIC16.6■□□□□ 0.25
VPS35Q96QK1 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VPS35Q96QK1 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC16.6■□□□□ 0.25
VPS35Q96QK1 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VPS35Q96QK1 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
VPS35Q96QK1 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.6■□□□□ 0.25
VPS35Q96QK1 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS35Q96QK1 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS35Q96QK1 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC16.59■□□□□ 0.25
VPS35Q96QK1 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
VPS35Q96QK1 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS35Q96QK1 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VPS35Q96QK1 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS35Q96QK1 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC16.59■□□□□ 0.25
VPS35Q96QK1 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VPS35Q96QK1 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS35Q96QK1 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS35Q96QK1 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS35Q96QK1 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VPS35Q96QK1 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VPS35Q96QK1 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms