Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LRCH3Q96II8 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LRCH3Q96II8 SLC25A24P2-201ENST00000415059 510 ntBASIC18.02■□□□□ 0.48
LRCH3Q96II8 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC18.02■□□□□ 0.48
LRCH3Q96II8 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC18.02■□□□□ 0.48
LRCH3Q96II8 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
LRCH3Q96II8 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC18.02■□□□□ 0.48
LRCH3Q96II8 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC18.02■□□□□ 0.48
LRCH3Q96II8 ZNF890P-202ENST00000530367 1156 ntBASIC18.02■□□□□ 0.48
LRCH3Q96II8 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC18.02■□□□□ 0.48
LRCH3Q96II8 LITAF-210ENST00000571976 548 ntTSL 2 BASIC18.02■□□□□ 0.48
LRCH3Q96II8 LITAF-214ENST00000574703 486 ntTSL 2 BASIC18.02■□□□□ 0.48
LRCH3Q96II8 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
LRCH3Q96II8 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC18.02■□□□□ 0.48
LRCH3Q96II8 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
LRCH3Q96II8 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC18.02■□□□□ 0.47
LRCH3Q96II8 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
LRCH3Q96II8 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC18.02■□□□□ 0.47
LRCH3Q96II8 PDIA3P1-201ENST00000471856 1510 ntBASIC18.02■□□□□ 0.47
LRCH3Q96II8 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
LRCH3Q96II8 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
LRCH3Q96II8 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC18.02■□□□□ 0.47
LRCH3Q96II8 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
LRCH3Q96II8 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
LRCH3Q96II8 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LRCH3Q96II8 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
LRCH3Q96II8 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LRCH3Q96II8 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC18.01■□□□□ 0.47
LRCH3Q96II8 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LRCH3Q96II8 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LRCH3Q96II8 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
LRCH3Q96II8 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LRCH3Q96II8 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
LRCH3Q96II8 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LRCH3Q96II8 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LRCH3Q96II8 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
LRCH3Q96II8 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
LRCH3Q96II8 AL353705.2-201ENST00000428243 662 ntBASIC18.01■□□□□ 0.47
LRCH3Q96II8 KRT43P-201ENST00000434019 910 ntBASIC18.01■□□□□ 0.47
LRCH3Q96II8 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC18.01■□□□□ 0.47
LRCH3Q96II8 IGHJ2P-201ENST00000454480 60 ntBASIC18.01■□□□□ 0.47
LRCH3Q96II8 AC098799.1-201ENST00000504752 800 ntBASIC18.01■□□□□ 0.47
LRCH3Q96II8 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC18.01■□□□□ 0.47
LRCH3Q96II8 AC044860.1-202ENST00000559481 777 ntBASIC18.01■□□□□ 0.47
LRCH3Q96II8 BTNL10-201ENST00000595971 695 ntBASIC18.01■□□□□ 0.47
LRCH3Q96II8 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC18.01■□□□□ 0.47
LRCH3Q96II8 AL031055.1-201ENST00000606362 631 ntBASIC18.01■□□□□ 0.47
LRCH3Q96II8 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC18.01■□□□□ 0.47
LRCH3Q96II8 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC18.01■□□□□ 0.47
LRCH3Q96II8 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC18.01■□□□□ 0.47
LRCH3Q96II8 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
LRCH3Q96II8 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LRCH3Q96II8 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LRCH3Q96II8 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LRCH3Q96II8 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
LRCH3Q96II8 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LRCH3Q96II8 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC18.01■□□□□ 0.47
LRCH3Q96II8 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LRCH3Q96II8 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC18.01■□□□□ 0.47
LRCH3Q96II8 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LRCH3Q96II8 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
LRCH3Q96II8 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
LRCH3Q96II8 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
LRCH3Q96II8 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
LRCH3Q96II8 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18■□□□□ 0.47
LRCH3Q96II8 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
LRCH3Q96II8 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC18■□□□□ 0.47
LRCH3Q96II8 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC18■□□□□ 0.47
LRCH3Q96II8 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
LRCH3Q96II8 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC18■□□□□ 0.47
LRCH3Q96II8 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC18■□□□□ 0.47
LRCH3Q96II8 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC18■□□□□ 0.47
LRCH3Q96II8 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
LRCH3Q96II8 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
LRCH3Q96II8 RNU1-129P-201ENST00000384064 167 ntBASIC18■□□□□ 0.47
LRCH3Q96II8 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC18■□□□□ 0.47
LRCH3Q96II8 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC18■□□□□ 0.47
LRCH3Q96II8 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC18■□□□□ 0.47
LRCH3Q96II8 AC007551.1-201ENST00000457394 519 ntBASIC18■□□□□ 0.47
LRCH3Q96II8 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC18■□□□□ 0.47
LRCH3Q96II8 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC18■□□□□ 0.47
LRCH3Q96II8 RAB35-202ENST00000534951 939 ntTSL 2 BASIC18■□□□□ 0.47
LRCH3Q96II8 U1.21-201ENST00000580816 167 ntBASIC18■□□□□ 0.47
LRCH3Q96II8 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC18■□□□□ 0.47
LRCH3Q96II8 AC015936.2-201ENST00000593177 259 ntBASIC18■□□□□ 0.47
LRCH3Q96II8 AC016629.1-201ENST00000596579 586 ntBASIC18■□□□□ 0.47
LRCH3Q96II8 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC18■□□□□ 0.47
LRCH3Q96II8 5S_rRNA.22-201ENST00000614916 106 ntBASIC18■□□□□ 0.47
LRCH3Q96II8 AP001002.2-201ENST00000625137 386 ntBASIC18■□□□□ 0.47
LRCH3Q96II8 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
LRCH3Q96II8 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC18■□□□□ 0.47
LRCH3Q96II8 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
LRCH3Q96II8 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC18■□□□□ 0.47
LRCH3Q96II8 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
LRCH3Q96II8 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC18■□□□□ 0.47
LRCH3Q96II8 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
LRCH3Q96II8 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
LRCH3Q96II8 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18■□□□□ 0.47
LRCH3Q96II8 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
LRCH3Q96II8 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms