Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC54Q8NEL0 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC54Q8NEL0 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
CCDC54Q8NEL0 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC14.65□□□□□ -0.06
CCDC54Q8NEL0 AMT-206ENST00000458307 1860 ntTSL 2 BASIC14.65□□□□□ -0.06
CCDC54Q8NEL0 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC54Q8NEL0 NORAD-201ENST00000565493 5339 ntBASIC14.65□□□□□ -0.06
CCDC54Q8NEL0 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
CCDC54Q8NEL0 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC54Q8NEL0 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC54Q8NEL0 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC14.65□□□□□ -0.06
CCDC54Q8NEL0 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC54Q8NEL0 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC14.65□□□□□ -0.06
CCDC54Q8NEL0 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC54Q8NEL0 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC54Q8NEL0 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC54Q8NEL0 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC54Q8NEL0 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
CCDC54Q8NEL0 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC14.65□□□□□ -0.06
CCDC54Q8NEL0 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC54Q8NEL0 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC54Q8NEL0 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC54Q8NEL0 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC14.65□□□□□ -0.06
CCDC54Q8NEL0 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC14.65□□□□□ -0.06
CCDC54Q8NEL0 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC14.65□□□□□ -0.06
CCDC54Q8NEL0 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC14.65□□□□□ -0.06
CCDC54Q8NEL0 AF228730.7-201ENST00000641842 219 ntBASIC14.65□□□□□ -0.06
CCDC54Q8NEL0 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC54Q8NEL0 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC54Q8NEL0 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC14.65□□□□□ -0.06
CCDC54Q8NEL0 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC54Q8NEL0 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC54Q8NEL0 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC14.65□□□□□ -0.06
CCDC54Q8NEL0 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC54Q8NEL0 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
CCDC54Q8NEL0 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC54Q8NEL0 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC54Q8NEL0 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC14.65□□□□□ -0.06
CCDC54Q8NEL0 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
CCDC54Q8NEL0 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
CCDC54Q8NEL0 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.07
CCDC54Q8NEL0 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.07
CCDC54Q8NEL0 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC14.65□□□□□ -0.07
CCDC54Q8NEL0 PCDHB19P-201ENST00000570871 2371 ntBASIC14.65□□□□□ -0.07
CCDC54Q8NEL0 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC54Q8NEL0 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC14.64□□□□□ -0.07
CCDC54Q8NEL0 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC14.64□□□□□ -0.07
CCDC54Q8NEL0 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC54Q8NEL0 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC54Q8NEL0 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC54Q8NEL0 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC14.64□□□□□ -0.07
CCDC54Q8NEL0 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC54Q8NEL0 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC14.64□□□□□ -0.07
CCDC54Q8NEL0 PCDH8P1-201ENST00000428983 2773 ntBASIC14.64□□□□□ -0.07
CCDC54Q8NEL0 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC54Q8NEL0 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC54Q8NEL0 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC54Q8NEL0 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC54Q8NEL0 LINC00554-201ENST00000564841 3011 ntBASIC14.64□□□□□ -0.07
CCDC54Q8NEL0 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC54Q8NEL0 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC54Q8NEL0 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC54Q8NEL0 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC54Q8NEL0 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC14.64□□□□□ -0.07
CCDC54Q8NEL0 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC54Q8NEL0 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC54Q8NEL0 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC14.64□□□□□ -0.07
CCDC54Q8NEL0 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
CCDC54Q8NEL0 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC14.64□□□□□ -0.07
CCDC54Q8NEL0 IGHV3OR16-7-201ENST00000604106 360 ntBASIC14.64□□□□□ -0.07
CCDC54Q8NEL0 AL139424.1-201ENST00000607572 797 ntBASIC14.64□□□□□ -0.07
CCDC54Q8NEL0 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC14.64□□□□□ -0.07
CCDC54Q8NEL0 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC54Q8NEL0 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
CCDC54Q8NEL0 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms