Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
DEPDC4Q8N2C3 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
DEPDC4Q8N2C3 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC15.66■□□□□ 0.1
DEPDC4Q8N2C3 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
DEPDC4Q8N2C3 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC15.66■□□□□ 0.1
DEPDC4Q8N2C3 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
DEPDC4Q8N2C3 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
DEPDC4Q8N2C3 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
DEPDC4Q8N2C3 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
DEPDC4Q8N2C3 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
DEPDC4Q8N2C3 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
DEPDC4Q8N2C3 AC026396.1-201ENST00000419388 421 ntBASIC15.66■□□□□ 0.1
DEPDC4Q8N2C3 RN7SL606P-201ENST00000472779 293 ntBASIC15.66■□□□□ 0.1
DEPDC4Q8N2C3 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
DEPDC4Q8N2C3 AC109462.3-201ENST00000573934 613 ntBASIC15.66■□□□□ 0.1
DEPDC4Q8N2C3 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
DEPDC4Q8N2C3 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
DEPDC4Q8N2C3 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC15.66■□□□□ 0.1
DEPDC4Q8N2C3 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
DEPDC4Q8N2C3 AC132872.4-202ENST00000622924 2756 ntBASIC15.66■□□□□ 0.1
DEPDC4Q8N2C3 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
DEPDC4Q8N2C3 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
DEPDC4Q8N2C3 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
DEPDC4Q8N2C3 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
DEPDC4Q8N2C3 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
DEPDC4Q8N2C3 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
DEPDC4Q8N2C3 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
DEPDC4Q8N2C3 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC15.66■□□□□ 0.1
DEPDC4Q8N2C3 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC15.66■□□□□ 0.1
DEPDC4Q8N2C3 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
DEPDC4Q8N2C3 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
DEPDC4Q8N2C3 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
DEPDC4Q8N2C3 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC15.65■□□□□ 0.1
DEPDC4Q8N2C3 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
DEPDC4Q8N2C3 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC15.65■□□□□ 0.1
DEPDC4Q8N2C3 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC15.65■□□□□ 0.1
DEPDC4Q8N2C3 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
DEPDC4Q8N2C3 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
DEPDC4Q8N2C3 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
DEPDC4Q8N2C3 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC15.65■□□□□ 0.1
DEPDC4Q8N2C3 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
DEPDC4Q8N2C3 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
DEPDC4Q8N2C3 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
DEPDC4Q8N2C3 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
DEPDC4Q8N2C3 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
DEPDC4Q8N2C3 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
DEPDC4Q8N2C3 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC15.65■□□□□ 0.1
DEPDC4Q8N2C3 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
DEPDC4Q8N2C3 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
DEPDC4Q8N2C3 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC15.65■□□□□ 0.1
DEPDC4Q8N2C3 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
DEPDC4Q8N2C3 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
DEPDC4Q8N2C3 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
DEPDC4Q8N2C3 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
DEPDC4Q8N2C3 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC15.65■□□□□ 0.1
DEPDC4Q8N2C3 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC15.65■□□□□ 0.1
DEPDC4Q8N2C3 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
DEPDC4Q8N2C3 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC15.65■□□□□ 0.1
DEPDC4Q8N2C3 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC15.65■□□□□ 0.1
DEPDC4Q8N2C3 FOSL1P1-201ENST00000511041 816 ntBASIC15.65■□□□□ 0.1
DEPDC4Q8N2C3 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
DEPDC4Q8N2C3 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
DEPDC4Q8N2C3 TPM1-218ENST00000559281 851 ntTSL 5 BASIC15.65■□□□□ 0.1
DEPDC4Q8N2C3 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC15.65■□□□□ 0.1
DEPDC4Q8N2C3 AC099336.1-202ENST00000602961 463 ntBASIC15.65■□□□□ 0.1
DEPDC4Q8N2C3 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC15.65■□□□□ 0.1
DEPDC4Q8N2C3 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
DEPDC4Q8N2C3 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
DEPDC4Q8N2C3 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
DEPDC4Q8N2C3 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
DEPDC4Q8N2C3 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
DEPDC4Q8N2C3 TUBB8P12-201ENST00000308911 1335 ntBASIC15.65■□□□□ 0.1
DEPDC4Q8N2C3 TUBB7P-202ENST00000428444 1305 ntBASIC15.65■□□□□ 0.1
DEPDC4Q8N2C3 TUBB8P7-204ENST00000567960 1332 ntBASIC15.65■□□□□ 0.1
DEPDC4Q8N2C3 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC15.65■□□□□ 0.1
DEPDC4Q8N2C3 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
DEPDC4Q8N2C3 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC15.65■□□□□ 0.1
DEPDC4Q8N2C3 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
DEPDC4Q8N2C3 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
DEPDC4Q8N2C3 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
DEPDC4Q8N2C3 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
DEPDC4Q8N2C3 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.1
DEPDC4Q8N2C3 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC15.64■□□□□ 0.1
DEPDC4Q8N2C3 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC15.64■□□□□ 0.1
DEPDC4Q8N2C3 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 65.7 ms