Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC009947.1-201ENST00000444350 727 ntBASIC14.86□□□□□ -0.03
SKA3Q8IX90 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC14.86□□□□□ -0.03
SKA3Q8IX90 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC14.86□□□□□ -0.03
SKA3Q8IX90 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC14.86□□□□□ -0.03
SKA3Q8IX90 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC14.86□□□□□ -0.03
SKA3Q8IX90 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
SKA3Q8IX90 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SKA3Q8IX90 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
SKA3Q8IX90 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC14.86□□□□□ -0.03
SKA3Q8IX90 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SKA3Q8IX90 REXO1L3P-201ENST00000622202 1288 ntBASIC14.86□□□□□ -0.03
SKA3Q8IX90 PCDHB19P-201ENST00000570871 2371 ntBASIC14.86□□□□□ -0.03
SKA3Q8IX90 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC14.86□□□□□ -0.03
SKA3Q8IX90 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SKA3Q8IX90 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
SKA3Q8IX90 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SKA3Q8IX90 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC14.86□□□□□ -0.03
SKA3Q8IX90 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC14.86□□□□□ -0.03
SKA3Q8IX90 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
SKA3Q8IX90 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SKA3Q8IX90 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC14.86□□□□□ -0.03
SKA3Q8IX90 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC14.86□□□□□ -0.03
SKA3Q8IX90 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SKA3Q8IX90 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC14.86□□□□□ -0.03
SKA3Q8IX90 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SKA3Q8IX90 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SKA3Q8IX90 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SKA3Q8IX90 TOP3BP1-201ENST00000420768 1380 ntBASIC14.85□□□□□ -0.03
SKA3Q8IX90 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
SKA3Q8IX90 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC14.85□□□□□ -0.03
SKA3Q8IX90 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SKA3Q8IX90 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SKA3Q8IX90 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SKA3Q8IX90 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SKA3Q8IX90 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
SKA3Q8IX90 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
SKA3Q8IX90 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SKA3Q8IX90 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
SKA3Q8IX90 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
SKA3Q8IX90 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC14.85□□□□□ -0.03
SKA3Q8IX90 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SKA3Q8IX90 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
SKA3Q8IX90 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC14.85□□□□□ -0.03
SKA3Q8IX90 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC14.85□□□□□ -0.03
SKA3Q8IX90 DOC2GP-204ENST00000639052 2548 ntBASIC14.85□□□□□ -0.03
SKA3Q8IX90 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC14.85□□□□□ -0.03
SKA3Q8IX90 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC14.85□□□□□ -0.03
SKA3Q8IX90 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC14.85□□□□□ -0.03
SKA3Q8IX90 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
SKA3Q8IX90 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SKA3Q8IX90 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC14.85□□□□□ -0.03
SKA3Q8IX90 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC14.85□□□□□ -0.03
SKA3Q8IX90 OR7E47P-204ENST00000575924 449 ntBASIC14.85□□□□□ -0.03
SKA3Q8IX90 CYB561-216ENST00000582297 897 ntTSL 3 BASIC14.85□□□□□ -0.03
SKA3Q8IX90 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC14.85□□□□□ -0.03
SKA3Q8IX90 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
SKA3Q8IX90 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SKA3Q8IX90 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SKA3Q8IX90 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
SKA3Q8IX90 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
SKA3Q8IX90 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
SKA3Q8IX90 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC14.85□□□□□ -0.03
SKA3Q8IX90 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SKA3Q8IX90 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SKA3Q8IX90 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
SKA3Q8IX90 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SKA3Q8IX90 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SKA3Q8IX90 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
SKA3Q8IX90 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
SKA3Q8IX90 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SKA3Q8IX90 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SKA3Q8IX90 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC14.84□□□□□ -0.03
SKA3Q8IX90 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC14.84□□□□□ -0.03
SKA3Q8IX90 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC14.84□□□□□ -0.03
SKA3Q8IX90 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC14.84□□□□□ -0.03
SKA3Q8IX90 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SKA3Q8IX90 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SKA3Q8IX90 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SKA3Q8IX90 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC14.84□□□□□ -0.03
SKA3Q8IX90 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SKA3Q8IX90 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
SKA3Q8IX90 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SKA3Q8IX90 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
SKA3Q8IX90 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC14.84□□□□□ -0.03
SKA3Q8IX90 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC14.84□□□□□ -0.03
SKA3Q8IX90 METTL26-205ENST00000397666 726 ntTSL 2 BASIC14.84□□□□□ -0.03
SKA3Q8IX90 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC14.84□□□□□ -0.03
SKA3Q8IX90 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SKA3Q8IX90 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC14.84□□□□□ -0.03
SKA3Q8IX90 RPL13AP23-201ENST00000480739 586 ntBASIC14.84□□□□□ -0.03
SKA3Q8IX90 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
SKA3Q8IX90 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC14.84□□□□□ -0.03
SKA3Q8IX90 MIR4751-201ENST00000578027 74 ntBASIC14.84□□□□□ -0.03
SKA3Q8IX90 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC14.84□□□□□ -0.03
SKA3Q8IX90 Z83851.2-201ENST00000609564 659 ntBASIC14.84□□□□□ -0.03
SKA3Q8IX90 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC14.84□□□□□ -0.03
SKA3Q8IX90 BX640515.1-201ENST00000617215 977 ntBASIC14.84□□□□□ -0.03
SKA3Q8IX90 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC14.84□□□□□ -0.03
SKA3Q8IX90 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC14.84□□□□□ -0.03
SKA3Q8IX90 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 57.7 ms