Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
CCDC58Q4VC31 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
CCDC58Q4VC31 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CCDC58Q4VC31 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CCDC58Q4VC31 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC15.04■□□□□ -0
CCDC58Q4VC31 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CCDC58Q4VC31 AL122018.1-201ENST00000446607 2310 ntBASIC15.04■□□□□ -0
CCDC58Q4VC31 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CCDC58Q4VC31 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC15.04■□□□□ -0
CCDC58Q4VC31 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CCDC58Q4VC31 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CCDC58Q4VC31 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
CCDC58Q4VC31 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC15.04■□□□□ -0
CCDC58Q4VC31 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC15.04■□□□□ -0
CCDC58Q4VC31 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC15.04■□□□□ -0
CCDC58Q4VC31 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CCDC58Q4VC31 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC15.04■□□□□ -0
CCDC58Q4VC31 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC15.04■□□□□ -0
CCDC58Q4VC31 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CCDC58Q4VC31 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
CCDC58Q4VC31 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC15.04■□□□□ -0
CCDC58Q4VC31 TSPY5P-201ENST00000426936 936 ntBASIC15.04■□□□□ -0
CCDC58Q4VC31 AC112907.2-201ENST00000448639 330 ntBASIC15.04■□□□□ -0
CCDC58Q4VC31 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC15.04■□□□□ -0
CCDC58Q4VC31 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC15.04■□□□□ -0
CCDC58Q4VC31 LY6E-213ENST00000522528 606 ntTSL 3 BASIC15.04■□□□□ -0
CCDC58Q4VC31 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC15.04■□□□□ -0
CCDC58Q4VC31 VENTXP5-201ENST00000523979 775 ntBASIC15.04■□□□□ -0
CCDC58Q4VC31 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC15.04■□□□□ -0
CCDC58Q4VC31 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC15.04■□□□□ -0
CCDC58Q4VC31 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC15.04■□□□□ -0
CCDC58Q4VC31 HYMAI.1-201ENST00000620949 238 ntBASIC15.04■□□□□ -0
CCDC58Q4VC31 AC073912.3-201ENST00000624414 853 ntBASIC15.04■□□□□ -0
CCDC58Q4VC31 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CCDC58Q4VC31 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CCDC58Q4VC31 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
CCDC58Q4VC31 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CCDC58Q4VC31 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CCDC58Q4VC31 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
CCDC58Q4VC31 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
CCDC58Q4VC31 AC068587.6-202ENST00000641839 5619 ntBASIC15.04■□□□□ -0
CCDC58Q4VC31 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC15.04■□□□□ -0
CCDC58Q4VC31 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
CCDC58Q4VC31 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
CCDC58Q4VC31 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CCDC58Q4VC31 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC15.04■□□□□ -0
CCDC58Q4VC31 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CCDC58Q4VC31 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC15.04■□□□□ -0
CCDC58Q4VC31 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC15.04■□□□□ -0
CCDC58Q4VC31 AMT-206ENST00000458307 1860 ntTSL 2 BASIC15.03■□□□□ -0
CCDC58Q4VC31 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC15.03■□□□□ -0
CCDC58Q4VC31 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CCDC58Q4VC31 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC15.03■□□□□ -0
CCDC58Q4VC31 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CCDC58Q4VC31 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
CCDC58Q4VC31 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
CCDC58Q4VC31 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC15.03■□□□□ -0
CCDC58Q4VC31 AC006538.1-201ENST00000567905 1585 ntBASIC15.03■□□□□ -0
CCDC58Q4VC31 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CCDC58Q4VC31 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
CCDC58Q4VC31 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
CCDC58Q4VC31 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CCDC58Q4VC31 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CCDC58Q4VC31 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
CCDC58Q4VC31 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC15.03■□□□□ -0
CCDC58Q4VC31 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC15.03■□□□□ -0
CCDC58Q4VC31 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CCDC58Q4VC31 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC15.03■□□□□ -0
CCDC58Q4VC31 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC15.03■□□□□ -0
CCDC58Q4VC31 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
CCDC58Q4VC31 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CCDC58Q4VC31 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC15.03■□□□□ -0
CCDC58Q4VC31 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
CCDC58Q4VC31 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
CCDC58Q4VC31 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CCDC58Q4VC31 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC15.03■□□□□ -0
CCDC58Q4VC31 RNF152P1-201ENST00000397754 604 ntBASIC15.03■□□□□ -0
CCDC58Q4VC31 AC087499.1-201ENST00000418141 1075 ntBASIC15.03■□□□□ -0
CCDC58Q4VC31 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC15.03■□□□□ -0
CCDC58Q4VC31 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC15.03■□□□□ -0
CCDC58Q4VC31 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CCDC58Q4VC31 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
CCDC58Q4VC31 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC15.03■□□□□ -0
CCDC58Q4VC31 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC15.03■□□□□ -0
CCDC58Q4VC31 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC15.03■□□□□ -0
CCDC58Q4VC31 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC15.03■□□□□ -0
CCDC58Q4VC31 AC005336.2-201ENST00000593183 939 ntBASIC15.03■□□□□ -0
CCDC58Q4VC31 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC15.03■□□□□ -0
CCDC58Q4VC31 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
CCDC58Q4VC31 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
CCDC58Q4VC31 AC138035.3-201ENST00000622706 2791 ntBASIC15.03■□□□□ -0
CCDC58Q4VC31 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC15.03■□□□□ -0
CCDC58Q4VC31 ME2P1-201ENST00000426028 1970 ntBASIC15.03■□□□□ -0
CCDC58Q4VC31 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC15.03■□□□□ -0
CCDC58Q4VC31 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC15.03■□□□□ -0
CCDC58Q4VC31 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CCDC58Q4VC31 AC079328.2-201ENST00000561241 3354 ntBASIC15.03■□□□□ -0
CCDC58Q4VC31 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC15.03■□□□□ -0
CCDC58Q4VC31 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC15.03■□□□□ -0
CCDC58Q4VC31 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC15.03■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 66.3 ms