Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
CCDC144BQ3MJ40 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC144BQ3MJ40 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC144BQ3MJ40 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC144BQ3MJ40 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC19.43■□□□□ 0.7
CCDC144BQ3MJ40 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC19.43■□□□□ 0.7
CCDC144BQ3MJ40 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
CCDC144BQ3MJ40 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC144BQ3MJ40 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC144BQ3MJ40 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC144BQ3MJ40 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC144BQ3MJ40 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC144BQ3MJ40 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
CCDC144BQ3MJ40 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC144BQ3MJ40 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC19.43■□□□□ 0.7
CCDC144BQ3MJ40 FAM8A3P-201ENST00000427218 844 ntBASIC19.43■□□□□ 0.7
CCDC144BQ3MJ40 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC144BQ3MJ40 PAWRP1-201ENST00000451083 565 ntBASIC19.43■□□□□ 0.7
CCDC144BQ3MJ40 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC144BQ3MJ40 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC19.43■□□□□ 0.7
CCDC144BQ3MJ40 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC144BQ3MJ40 TK1-204ENST00000590430 683 ntTSL 3 BASIC19.43■□□□□ 0.7
CCDC144BQ3MJ40 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC19.43■□□□□ 0.7
CCDC144BQ3MJ40 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC19.43■□□□□ 0.7
CCDC144BQ3MJ40 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC144BQ3MJ40 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC144BQ3MJ40 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC144BQ3MJ40 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC144BQ3MJ40 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC144BQ3MJ40 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC144BQ3MJ40 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC144BQ3MJ40 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC19.43■□□□□ 0.7
CCDC144BQ3MJ40 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC144BQ3MJ40 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC19.43■□□□□ 0.7
CCDC144BQ3MJ40 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC19.43■□□□□ 0.7
CCDC144BQ3MJ40 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC144BQ3MJ40 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC144BQ3MJ40 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC144BQ3MJ40 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC19.43■□□□□ 0.7
CCDC144BQ3MJ40 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC144BQ3MJ40 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC144BQ3MJ40 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC144BQ3MJ40 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC19.42■□□□□ 0.7
CCDC144BQ3MJ40 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC19.42■□□□□ 0.7
CCDC144BQ3MJ40 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC19.42■□□□□ 0.7
CCDC144BQ3MJ40 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC144BQ3MJ40 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
CCDC144BQ3MJ40 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC19.42■□□□□ 0.7
CCDC144BQ3MJ40 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC144BQ3MJ40 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
CCDC144BQ3MJ40 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC144BQ3MJ40 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC144BQ3MJ40 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC144BQ3MJ40 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC144BQ3MJ40 AC004449.1-201ENST00000564240 433 ntBASIC19.42■□□□□ 0.7
CCDC144BQ3MJ40 AC092364.2-202ENST00000597012 1073 ntBASIC19.42■□□□□ 0.7
CCDC144BQ3MJ40 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC19.42■□□□□ 0.7
CCDC144BQ3MJ40 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC144BQ3MJ40 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC144BQ3MJ40 AC138932.1-201ENST00000534164 6830 ntBASIC19.42■□□□□ 0.7
CCDC144BQ3MJ40 PCDHB17P-201ENST00000539533 2393 ntBASIC19.42■□□□□ 0.7
CCDC144BQ3MJ40 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC19.42■□□□□ 0.7
CCDC144BQ3MJ40 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC19.42■□□□□ 0.7
CCDC144BQ3MJ40 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC144BQ3MJ40 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC144BQ3MJ40 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC19.42■□□□□ 0.7
CCDC144BQ3MJ40 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC144BQ3MJ40 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC144BQ3MJ40 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC144BQ3MJ40 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC19.41■□□□□ 0.7
CCDC144BQ3MJ40 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC144BQ3MJ40 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC144BQ3MJ40 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC144BQ3MJ40 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC144BQ3MJ40 AC078925.2-201ENST00000624013 1973 ntBASIC19.41■□□□□ 0.7
CCDC144BQ3MJ40 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC144BQ3MJ40 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC144BQ3MJ40 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC144BQ3MJ40 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC144BQ3MJ40 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC144BQ3MJ40 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC144BQ3MJ40 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC19.41■□□□□ 0.7
CCDC144BQ3MJ40 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC144BQ3MJ40 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC19.41■□□□□ 0.7
CCDC144BQ3MJ40 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC19.41■□□□□ 0.7
CCDC144BQ3MJ40 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC144BQ3MJ40 AC022145.2-201ENST00000598203 171 ntBASIC19.41■□□□□ 0.7
CCDC144BQ3MJ40 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC19.41■□□□□ 0.7
CCDC144BQ3MJ40 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC144BQ3MJ40 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC144BQ3MJ40 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC144BQ3MJ40 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
CCDC144BQ3MJ40 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC144BQ3MJ40 AC016396.2-201ENST00000562575 1417 ntBASIC19.41■□□□□ 0.7
CCDC144BQ3MJ40 AC092053.1-201ENST00000605787 1936 ntBASIC19.41■□□□□ 0.7
CCDC144BQ3MJ40 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC144BQ3MJ40 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC144BQ3MJ40 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
CCDC144BQ3MJ40 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC144BQ3MJ40 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms