Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC18.41■□□□□ 0.54
PEX3P56589 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
PEX3P56589 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
PEX3P56589 AL512652.2-201ENST00000625156 1716 ntBASIC18.41■□□□□ 0.54
PEX3P56589 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC18.41■□□□□ 0.54
PEX3P56589 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
PEX3P56589 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PEX3P56589 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
PEX3P56589 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
PEX3P56589 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC18.41■□□□□ 0.54
PEX3P56589 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
PEX3P56589 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC18.41■□□□□ 0.54
PEX3P56589 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC18.41■□□□□ 0.54
PEX3P56589 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
PEX3P56589 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
PEX3P56589 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
PEX3P56589 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
PEX3P56589 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC18.41■□□□□ 0.54
PEX3P56589 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
PEX3P56589 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC18.41■□□□□ 0.54
PEX3P56589 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC18.41■□□□□ 0.54
PEX3P56589 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
PEX3P56589 MIR4469-201ENST00000583919 79 ntBASIC18.41■□□□□ 0.54
PEX3P56589 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC18.41■□□□□ 0.54
PEX3P56589 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC18.41■□□□□ 0.54
PEX3P56589 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PEX3P56589 AC092171.3-201ENST00000610122 2651 ntBASIC18.41■□□□□ 0.54
PEX3P56589 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
PEX3P56589 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PEX3P56589 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
PEX3P56589 ELL2P1-201ENST00000413990 1906 ntBASIC18.41■□□□□ 0.54
PEX3P56589 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PEX3P56589 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PEX3P56589 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC18.4■□□□□ 0.54
PEX3P56589 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PEX3P56589 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PEX3P56589 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC18.4■□□□□ 0.54
PEX3P56589 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PEX3P56589 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
PEX3P56589 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
PEX3P56589 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PEX3P56589 HLA-A-202ENST00000376806 1854 ntBASIC18.4■□□□□ 0.54
PEX3P56589 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC18.4■□□□□ 0.54
PEX3P56589 AC006538.1-201ENST00000567905 1585 ntBASIC18.4■□□□□ 0.54
PEX3P56589 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PEX3P56589 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PEX3P56589 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PEX3P56589 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
PEX3P56589 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PEX3P56589 CEND1P1-201ENST00000451006 455 ntBASIC18.4■□□□□ 0.54
PEX3P56589 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC18.4■□□□□ 0.54
PEX3P56589 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
PEX3P56589 YBX1P5-201ENST00000509441 847 ntBASIC18.4■□□□□ 0.54
PEX3P56589 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC18.4■□□□□ 0.54
PEX3P56589 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC18.4■□□□□ 0.54
PEX3P56589 IGHV3OR16-6-201ENST00000568775 360 ntBASIC18.4■□□□□ 0.54
PEX3P56589 CITED2-204ENST00000618718 901 ntTSL 2 BASIC18.4■□□□□ 0.54
PEX3P56589 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
PEX3P56589 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PEX3P56589 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC18.4■□□□□ 0.54
PEX3P56589 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PEX3P56589 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
PEX3P56589 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC18.4■□□□□ 0.54
PEX3P56589 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC18.4■□□□□ 0.54
PEX3P56589 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC18.4■□□□□ 0.54
PEX3P56589 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC18.4■□□□□ 0.54
PEX3P56589 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
PEX3P56589 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PEX3P56589 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PEX3P56589 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
PEX3P56589 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PEX3P56589 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
PEX3P56589 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
PEX3P56589 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PEX3P56589 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
PEX3P56589 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
PEX3P56589 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC18.39■□□□□ 0.54
PEX3P56589 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC18.39■□□□□ 0.54
PEX3P56589 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.54
PEX3P56589 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
PEX3P56589 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
PEX3P56589 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PEX3P56589 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
PEX3P56589 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
PEX3P56589 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
PEX3P56589 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PEX3P56589 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PEX3P56589 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PEX3P56589 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
PEX3P56589 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC18.39■□□□□ 0.53
PEX3P56589 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC18.39■□□□□ 0.53
PEX3P56589 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
PEX3P56589 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC18.39■□□□□ 0.53
PEX3P56589 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC18.39■□□□□ 0.53
PEX3P56589 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC18.39■□□□□ 0.53
PEX3P56589 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC18.39■□□□□ 0.53
PEX3P56589 AC021097.1-201ENST00000607902 574 ntBASIC18.39■□□□□ 0.53
PEX3P56589 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC18.39■□□□□ 0.53
PEX3P56589 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC18.39■□□□□ 0.53
PEX3P56589 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC18.39■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 256.8 ms