Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
EPHB3P54753 AC141586.5-201ENST00000624546 2050 ntBASIC17.41■□□□□ 0.38
EPHB3P54753 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
EPHB3P54753 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC17.41■□□□□ 0.38
EPHB3P54753 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
EPHB3P54753 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
EPHB3P54753 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
EPHB3P54753 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC17.4■□□□□ 0.38
EPHB3P54753 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
EPHB3P54753 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
EPHB3P54753 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC17.4■□□□□ 0.38
EPHB3P54753 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
EPHB3P54753 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
EPHB3P54753 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC17.4■□□□□ 0.38
EPHB3P54753 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
EPHB3P54753 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
EPHB3P54753 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
EPHB3P54753 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
EPHB3P54753 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
EPHB3P54753 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC17.4■□□□□ 0.38
EPHB3P54753 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
EPHB3P54753 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
EPHB3P54753 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
EPHB3P54753 DPM2-202ENST00000373110 738 ntTSL 2 BASIC17.4■□□□□ 0.38
EPHB3P54753 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC17.4■□□□□ 0.38
EPHB3P54753 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC17.4■□□□□ 0.38
EPHB3P54753 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC17.4■□□□□ 0.38
EPHB3P54753 QPRT-203ENST00000562473 579 ntTSL 3 BASIC17.4■□□□□ 0.38
EPHB3P54753 AC138761.1-201ENST00000584393 385 ntBASIC17.4■□□□□ 0.38
EPHB3P54753 PCDHB17P-201ENST00000539533 2393 ntBASIC17.4■□□□□ 0.38
EPHB3P54753 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC17.4■□□□□ 0.38
EPHB3P54753 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
EPHB3P54753 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
EPHB3P54753 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC17.4■□□□□ 0.38
EPHB3P54753 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC17.4■□□□□ 0.38
EPHB3P54753 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
EPHB3P54753 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
EPHB3P54753 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
EPHB3P54753 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
EPHB3P54753 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
EPHB3P54753 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
EPHB3P54753 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
EPHB3P54753 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC17.39■□□□□ 0.37
EPHB3P54753 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
EPHB3P54753 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC17.39■□□□□ 0.37
EPHB3P54753 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
EPHB3P54753 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC17.39■□□□□ 0.37
EPHB3P54753 HLA-H-201ENST00000383620 1096 ntBASIC17.39■□□□□ 0.37
EPHB3P54753 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
EPHB3P54753 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC17.39■□□□□ 0.37
EPHB3P54753 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC17.39■□□□□ 0.37
EPHB3P54753 COQ4-205ENST00000609948 956 ntTSL 2 BASIC17.39■□□□□ 0.37
EPHB3P54753 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC17.39■□□□□ 0.37
EPHB3P54753 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
EPHB3P54753 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
EPHB3P54753 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC17.39■□□□□ 0.37
EPHB3P54753 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
EPHB3P54753 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC17.39■□□□□ 0.37
EPHB3P54753 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC17.39■□□□□ 0.37
EPHB3P54753 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
EPHB3P54753 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
EPHB3P54753 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
EPHB3P54753 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC17.39■□□□□ 0.37
EPHB3P54753 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
EPHB3P54753 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
EPHB3P54753 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
EPHB3P54753 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
EPHB3P54753 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
EPHB3P54753 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC17.38■□□□□ 0.37
EPHB3P54753 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC17.38■□□□□ 0.37
EPHB3P54753 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC17.38■□□□□ 0.37
EPHB3P54753 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
EPHB3P54753 AC073439.1-201ENST00000624121 1774 ntBASIC17.38■□□□□ 0.37
EPHB3P54753 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
EPHB3P54753 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
EPHB3P54753 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC17.38■□□□□ 0.37
EPHB3P54753 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC17.38■□□□□ 0.37
EPHB3P54753 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
EPHB3P54753 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
EPHB3P54753 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
EPHB3P54753 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
EPHB3P54753 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
EPHB3P54753 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC17.38■□□□□ 0.37
EPHB3P54753 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC17.38■□□□□ 0.37
EPHB3P54753 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
EPHB3P54753 TSPY16P-201ENST00000449843 468 ntBASIC17.38■□□□□ 0.37
EPHB3P54753 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC17.38■□□□□ 0.37
EPHB3P54753 COX20P2-201ENST00000452636 358 ntBASIC17.38■□□□□ 0.37
EPHB3P54753 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC17.38■□□□□ 0.37
EPHB3P54753 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC17.38■□□□□ 0.37
EPHB3P54753 SPTSSB-204ENST00000617024 1292 ntBASIC17.38■□□□□ 0.37
EPHB3P54753 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC17.38■□□□□ 0.37
EPHB3P54753 GRAMD4P3-201ENST00000621665 1669 ntBASIC17.38■□□□□ 0.37
EPHB3P54753 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
EPHB3P54753 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
EPHB3P54753 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
EPHB3P54753 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
EPHB3P54753 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC17.38■□□□□ 0.37
EPHB3P54753 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
EPHB3P54753 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms