Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC15.34■□□□□ 0.05
RFC3P40938 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RFC3P40938 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
RFC3P40938 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC15.34■□□□□ 0.05
RFC3P40938 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
RFC3P40938 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RFC3P40938 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC15.34■□□□□ 0.05
RFC3P40938 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
RFC3P40938 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
RFC3P40938 AC080080.1-201ENST00000625121 2420 ntBASIC15.34■□□□□ 0.05
RFC3P40938 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC15.34■□□□□ 0.05
RFC3P40938 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
RFC3P40938 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RFC3P40938 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RFC3P40938 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RFC3P40938 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
RFC3P40938 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RFC3P40938 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC15.34■□□□□ 0.05
RFC3P40938 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RFC3P40938 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RFC3P40938 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RFC3P40938 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
RFC3P40938 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RFC3P40938 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
RFC3P40938 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
RFC3P40938 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
RFC3P40938 SPDYE11-202ENST00000450699 704 ntBASIC15.34■□□□□ 0.05
RFC3P40938 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC15.34■□□□□ 0.05
RFC3P40938 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC15.34■□□□□ 0.05
RFC3P40938 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC15.34■□□□□ 0.05
RFC3P40938 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
RFC3P40938 RFPL4AP1-201ENST00000530883 850 ntBASIC15.34■□□□□ 0.05
RFC3P40938 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC15.34■□□□□ 0.05
RFC3P40938 AC004449.1-201ENST00000564240 433 ntBASIC15.34■□□□□ 0.05
RFC3P40938 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
RFC3P40938 SPDYE9P-201ENST00000570642 692 ntBASIC15.34■□□□□ 0.05
RFC3P40938 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
RFC3P40938 SPDYE10P-202ENST00000612005 668 ntBASIC15.34■□□□□ 0.05
RFC3P40938 SPDYE8P-202ENST00000612377 668 ntBASIC15.34■□□□□ 0.05
RFC3P40938 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RFC3P40938 AC092053.1-201ENST00000605787 1936 ntBASIC15.34■□□□□ 0.05
RFC3P40938 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RFC3P40938 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
RFC3P40938 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RFC3P40938 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC15.34■□□□□ 0.05
RFC3P40938 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC15.34■□□□□ 0.05
RFC3P40938 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RFC3P40938 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RFC3P40938 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RFC3P40938 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
RFC3P40938 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
RFC3P40938 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC15.34■□□□□ 0.05
RFC3P40938 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RFC3P40938 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RFC3P40938 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RFC3P40938 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
RFC3P40938 FOS-208ENST00000555686 1496 ntTSL 2 BASIC15.33■□□□□ 0.05
RFC3P40938 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
RFC3P40938 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.05
RFC3P40938 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
RFC3P40938 FRMD8P1-201ENST00000440433 1524 ntBASIC15.33■□□□□ 0.05
RFC3P40938 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC15.33■□□□□ 0.05
RFC3P40938 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
RFC3P40938 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
RFC3P40938 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.05
RFC3P40938 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
RFC3P40938 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RFC3P40938 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
RFC3P40938 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
RFC3P40938 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
RFC3P40938 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC15.33■□□□□ 0.04
RFC3P40938 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RFC3P40938 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
RFC3P40938 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
RFC3P40938 AL645939.2-201ENST00000427340 991 ntBASIC15.33■□□□□ 0.04
RFC3P40938 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC15.33■□□□□ 0.04
RFC3P40938 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
RFC3P40938 CYMP-203ENST00000474680 1263 ntBASIC15.33■□□□□ 0.04
RFC3P40938 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC15.33■□□□□ 0.04
RFC3P40938 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC15.33■□□□□ 0.04
RFC3P40938 DUX4L17-201ENST00000557360 1267 ntBASIC15.33■□□□□ 0.04
RFC3P40938 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC15.33■□□□□ 0.04
RFC3P40938 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC15.33■□□□□ 0.04
RFC3P40938 AC026120.1-201ENST00000611536 926 ntBASIC15.33■□□□□ 0.04
RFC3P40938 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC15.33■□□□□ 0.04
RFC3P40938 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
RFC3P40938 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RFC3P40938 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
RFC3P40938 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
RFC3P40938 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RFC3P40938 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RFC3P40938 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
RFC3P40938 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
RFC3P40938 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
RFC3P40938 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
RFC3P40938 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
RFC3P40938 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
RFC3P40938 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
RFC3P40938 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RFC3P40938 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 62.9 ms