Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC015936.2-201ENST00000593177 259 ntBASIC21.69■■□□□ 1.06
COL18A1P39060 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
COL18A1P39060 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC21.69■■□□□ 1.06
COL18A1P39060 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL18A1P39060 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
COL18A1P39060 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL18A1P39060 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL18A1P39060 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL18A1P39060 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL18A1P39060 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL18A1P39060 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
COL18A1P39060 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
COL18A1P39060 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC21.68■■□□□ 1.06
COL18A1P39060 MEP1AP4-201ENST00000423244 1087 ntBASIC21.68■■□□□ 1.06
COL18A1P39060 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL18A1P39060 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
COL18A1P39060 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC21.68■■□□□ 1.06
COL18A1P39060 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
COL18A1P39060 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC21.68■■□□□ 1.06
COL18A1P39060 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
COL18A1P39060 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL18A1P39060 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL18A1P39060 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC21.68■■□□□ 1.06
COL18A1P39060 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL18A1P39060 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
COL18A1P39060 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL18A1P39060 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
COL18A1P39060 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC21.67■■□□□ 1.06
COL18A1P39060 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL18A1P39060 CDC14C-201ENST00000428251 1719 ntBASIC21.67■■□□□ 1.06
COL18A1P39060 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
COL18A1P39060 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC21.67■■□□□ 1.06
COL18A1P39060 AL139010.1-201ENST00000454878 894 ntBASIC21.67■■□□□ 1.06
COL18A1P39060 MFF-223ENST00000524634 647 ntTSL 2 BASIC21.67■■□□□ 1.06
COL18A1P39060 PACS1-203ENST00000524815 628 ntTSL 4 BASIC21.67■■□□□ 1.06
COL18A1P39060 NEU3-203ENST00000529024 581 ntTSL 3 BASIC21.67■■□□□ 1.06
COL18A1P39060 NOP2-211ENST00000540228 668 ntTSL 2 BASIC21.67■■□□□ 1.06
COL18A1P39060 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC21.67■■□□□ 1.06
COL18A1P39060 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
COL18A1P39060 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL18A1P39060 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL18A1P39060 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL18A1P39060 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL18A1P39060 Z97205.2-201ENST00000564697 1639 ntBASIC21.67■■□□□ 1.06
COL18A1P39060 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC21.67■■□□□ 1.06
COL18A1P39060 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL18A1P39060 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC21.67■■□□□ 1.06
COL18A1P39060 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
COL18A1P39060 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL18A1P39060 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL18A1P39060 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
COL18A1P39060 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
COL18A1P39060 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
COL18A1P39060 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL18A1P39060 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC21.66■■□□□ 1.06
COL18A1P39060 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL18A1P39060 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC21.66■■□□□ 1.06
COL18A1P39060 RARRES2P5-201ENST00000564013 466 ntBASIC21.66■■□□□ 1.06
COL18A1P39060 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL18A1P39060 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC21.66■■□□□ 1.06
COL18A1P39060 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
COL18A1P39060 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL18A1P39060 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC21.66■■□□□ 1.06
COL18A1P39060 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL18A1P39060 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC21.66■■□□□ 1.06
COL18A1P39060 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL18A1P39060 PP12613-201ENST00000424958 2230 ntBASIC21.66■■□□□ 1.06
COL18A1P39060 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL18A1P39060 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC21.66■■□□□ 1.06
COL18A1P39060 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL18A1P39060 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL18A1P39060 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL18A1P39060 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL18A1P39060 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
COL18A1P39060 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC21.66■■□□□ 1.06
COL18A1P39060 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC21.66■■□□□ 1.06
COL18A1P39060 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC21.66■■□□□ 1.06
COL18A1P39060 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL18A1P39060 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL18A1P39060 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC21.66■■□□□ 1.06
COL18A1P39060 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL18A1P39060 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL18A1P39060 AC018665.1-201ENST00000622927 1362 ntBASIC21.65■■□□□ 1.06
COL18A1P39060 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL18A1P39060 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
COL18A1P39060 CD276-203ENST00000537340 2439 ntTSL 2 BASIC21.65■■□□□ 1.06
COL18A1P39060 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
COL18A1P39060 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
COL18A1P39060 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
COL18A1P39060 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
COL18A1P39060 NSL1-201ENST00000366976 722 ntTSL 2 BASIC21.65■■□□□ 1.06
COL18A1P39060 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
COL18A1P39060 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC21.65■■□□□ 1.06
COL18A1P39060 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
COL18A1P39060 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC21.65■■□□□ 1.06
COL18A1P39060 MIR4321-201ENST00000592276 80 ntBASIC21.65■■□□□ 1.06
COL18A1P39060 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
COL18A1P39060 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
COL18A1P39060 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
COL18A1P39060 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC21.65■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms