Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
RORAP35398 LTF-203ENST00000426532 2494 ntTSL 2 BASIC15.89■□□□□ 0.13
RORAP35398 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
RORAP35398 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC15.89■□□□□ 0.13
RORAP35398 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
RORAP35398 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
RORAP35398 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
RORAP35398 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
RORAP35398 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
RORAP35398 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC15.89■□□□□ 0.13
RORAP35398 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
RORAP35398 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
RORAP35398 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
RORAP35398 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
RORAP35398 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
RORAP35398 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
RORAP35398 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
RORAP35398 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
RORAP35398 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
RORAP35398 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC15.89■□□□□ 0.13
RORAP35398 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC15.89■□□□□ 0.13
RORAP35398 AL592309.1-201ENST00000443127 649 ntBASIC15.89■□□□□ 0.13
RORAP35398 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
RORAP35398 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
RORAP35398 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
RORAP35398 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC15.89■□□□□ 0.13
RORAP35398 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC15.89■□□□□ 0.13
RORAP35398 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC15.89■□□□□ 0.13
RORAP35398 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC15.89■□□□□ 0.13
RORAP35398 AC004449.1-201ENST00000564240 433 ntBASIC15.89■□□□□ 0.13
RORAP35398 LSM12-202ENST00000585388 942 ntTSL 3 BASIC15.89■□□□□ 0.13
RORAP35398 AC106028.4-201ENST00000614509 607 ntBASIC15.89■□□□□ 0.13
RORAP35398 LINC00628-201ENST00000628516 1289 ntBASIC15.89■□□□□ 0.13
RORAP35398 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
RORAP35398 HARS-204ENST00000438307 1789 ntTSL 2 BASIC15.89■□□□□ 0.13
RORAP35398 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC15.89■□□□□ 0.13
RORAP35398 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
RORAP35398 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
RORAP35398 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC15.89■□□□□ 0.13
RORAP35398 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC15.89■□□□□ 0.13
RORAP35398 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
RORAP35398 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
RORAP35398 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
RORAP35398 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC15.89■□□□□ 0.13
RORAP35398 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC15.89■□□□□ 0.13
RORAP35398 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC15.89■□□□□ 0.13
RORAP35398 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
RORAP35398 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC15.88■□□□□ 0.13
RORAP35398 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
RORAP35398 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
RORAP35398 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC15.88■□□□□ 0.13
RORAP35398 AC131009.4-201ENST00000624048 1740 ntBASIC15.88■□□□□ 0.13
RORAP35398 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
RORAP35398 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
RORAP35398 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
RORAP35398 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC15.88■□□□□ 0.13
RORAP35398 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
RORAP35398 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
RORAP35398 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
RORAP35398 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
RORAP35398 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC15.88■□□□□ 0.13
RORAP35398 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
RORAP35398 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
RORAP35398 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
RORAP35398 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
RORAP35398 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC15.88■□□□□ 0.13
RORAP35398 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
RORAP35398 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
RORAP35398 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
RORAP35398 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
RORAP35398 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
RORAP35398 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC15.88■□□□□ 0.13
RORAP35398 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC15.88■□□□□ 0.13
RORAP35398 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
RORAP35398 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
RORAP35398 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
RORAP35398 AL031055.1-201ENST00000606362 631 ntBASIC15.88■□□□□ 0.13
RORAP35398 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
RORAP35398 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC15.88■□□□□ 0.13
RORAP35398 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
RORAP35398 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC15.88■□□□□ 0.13
RORAP35398 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
RORAP35398 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC15.88■□□□□ 0.13
RORAP35398 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC15.88■□□□□ 0.13
RORAP35398 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
RORAP35398 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
RORAP35398 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC15.88■□□□□ 0.13
RORAP35398 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
RORAP35398 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
RORAP35398 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC15.87■□□□□ 0.13
RORAP35398 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC15.87■□□□□ 0.13
RORAP35398 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
RORAP35398 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
RORAP35398 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
RORAP35398 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
RORAP35398 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
RORAP35398 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC15.87■□□□□ 0.13
RORAP35398 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC15.87■□□□□ 0.13
RORAP35398 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
RORAP35398 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms