Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC12.95□□□□□ -0.34
HOXD3P31249 AC012313.1-201ENST00000593393 3059 ntBASIC12.95□□□□□ -0.34
HOXD3P31249 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
HOXD3P31249 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC12.95□□□□□ -0.34
HOXD3P31249 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC12.95□□□□□ -0.34
HOXD3P31249 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HOXD3P31249 AC060834.1-201ENST00000443027 2032 ntBASIC12.95□□□□□ -0.34
HOXD3P31249 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
HOXD3P31249 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
HOXD3P31249 AC012569.1-201ENST00000591191 1524 ntBASIC12.95□□□□□ -0.34
HOXD3P31249 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
HOXD3P31249 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HOXD3P31249 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HOXD3P31249 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC12.95□□□□□ -0.34
HOXD3P31249 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC12.95□□□□□ -0.34
HOXD3P31249 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
HOXD3P31249 HCG4-201ENST00000418983 998 ntBASIC12.95□□□□□ -0.34
HOXD3P31249 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC12.95□□□□□ -0.34
HOXD3P31249 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
HOXD3P31249 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC12.95□□□□□ -0.34
HOXD3P31249 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
HOXD3P31249 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
HOXD3P31249 RNF34-208ENST00000555076 593 ntTSL 3 BASIC12.95□□□□□ -0.34
HOXD3P31249 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC12.95□□□□□ -0.34
HOXD3P31249 LSM12-202ENST00000585388 942 ntTSL 3 BASIC12.95□□□□□ -0.34
HOXD3P31249 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
HOXD3P31249 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC12.95□□□□□ -0.34
HOXD3P31249 AP001350.2-201ENST00000625104 1094 ntBASIC12.95□□□□□ -0.34
HOXD3P31249 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HOXD3P31249 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
HOXD3P31249 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
HOXD3P31249 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC12.95□□□□□ -0.34
HOXD3P31249 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
HOXD3P31249 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC12.95□□□□□ -0.34
HOXD3P31249 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
HOXD3P31249 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC12.95□□□□□ -0.34
HOXD3P31249 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HOXD3P31249 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
HOXD3P31249 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HOXD3P31249 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC12.95□□□□□ -0.34
HOXD3P31249 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HOXD3P31249 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
HOXD3P31249 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HOXD3P31249 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HOXD3P31249 AL121761.2-201ENST00000598007 1648 ntBASIC12.95□□□□□ -0.34
HOXD3P31249 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC12.95□□□□□ -0.34
HOXD3P31249 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC12.95□□□□□ -0.34
HOXD3P31249 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
HOXD3P31249 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
HOXD3P31249 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HOXD3P31249 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC12.94□□□□□ -0.34
HOXD3P31249 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
HOXD3P31249 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC12.94□□□□□ -0.34
HOXD3P31249 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
HOXD3P31249 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC12.94□□□□□ -0.34
HOXD3P31249 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
HOXD3P31249 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC12.94□□□□□ -0.34
HOXD3P31249 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC12.94□□□□□ -0.34
HOXD3P31249 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
HOXD3P31249 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
HOXD3P31249 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
HOXD3P31249 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HOXD3P31249 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
HOXD3P31249 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HOXD3P31249 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
HOXD3P31249 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
HOXD3P31249 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC12.94□□□□□ -0.34
HOXD3P31249 NMU-203ENST00000507338 658 ntTSL 3 BASIC12.94□□□□□ -0.34
HOXD3P31249 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC12.94□□□□□ -0.34
HOXD3P31249 MMP17-203ENST00000535004 719 ntTSL 3 BASIC12.94□□□□□ -0.34
HOXD3P31249 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC12.94□□□□□ -0.34
HOXD3P31249 SPCS2P1-201ENST00000561636 679 ntBASIC12.94□□□□□ -0.34
HOXD3P31249 MPDU1-223ENST00000582151 728 ntBASIC12.94□□□□□ -0.34
HOXD3P31249 MIR4515-201ENST00000584082 81 ntBASIC12.94□□□□□ -0.34
HOXD3P31249 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
HOXD3P31249 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC12.94□□□□□ -0.34
HOXD3P31249 AC022145.2-201ENST00000598203 171 ntBASIC12.94□□□□□ -0.34
HOXD3P31249 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC12.94□□□□□ -0.34
HOXD3P31249 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HOXD3P31249 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC12.94□□□□□ -0.34
HOXD3P31249 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC12.94□□□□□ -0.34
HOXD3P31249 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HOXD3P31249 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
HOXD3P31249 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
HOXD3P31249 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HOXD3P31249 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC12.94□□□□□ -0.34
HOXD3P31249 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
HOXD3P31249 HARS-203ENST00000431330 1774 ntTSL 2 BASIC12.94□□□□□ -0.34
HOXD3P31249 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HOXD3P31249 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC12.94□□□□□ -0.34
HOXD3P31249 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HOXD3P31249 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HOXD3P31249 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HOXD3P31249 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
HOXD3P31249 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC12.93□□□□□ -0.34
HOXD3P31249 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC12.93□□□□□ -0.34
HOXD3P31249 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
HOXD3P31249 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
HOXD3P31249 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HOXD3P31249 ACE-204ENST00000428043 5120 ntTSL 2 BASIC12.93□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms