Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SMARCA1P28370 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
SMARCA1P28370 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SMARCA1P28370 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SMARCA1P28370 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SMARCA1P28370 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
SMARCA1P28370 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SMARCA1P28370 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SMARCA1P28370 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SMARCA1P28370 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC19.12■□□□□ 0.65
SMARCA1P28370 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SMARCA1P28370 PCGF3-213ENST00000620529 1899 ntBASIC19.12■□□□□ 0.65
SMARCA1P28370 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SMARCA1P28370 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
SMARCA1P28370 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC19.12■□□□□ 0.65
SMARCA1P28370 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SMARCA1P28370 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC19.12■□□□□ 0.65
SMARCA1P28370 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC19.12■□□□□ 0.65
SMARCA1P28370 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SMARCA1P28370 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SMARCA1P28370 URGCP-206ENST00000446958 365 ntTSL 2 BASIC19.12■□□□□ 0.65
SMARCA1P28370 AC069335.1-201ENST00000489972 472 ntBASIC19.12■□□□□ 0.65
SMARCA1P28370 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC19.12■□□□□ 0.65
SMARCA1P28370 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
SMARCA1P28370 QPRT-203ENST00000562473 579 ntTSL 3 BASIC19.12■□□□□ 0.65
SMARCA1P28370 SNHG9-202ENST00000564014 471 ntBASIC19.12■□□□□ 0.65
SMARCA1P28370 AL138918.1-201ENST00000568306 659 ntBASIC19.12■□□□□ 0.65
SMARCA1P28370 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SMARCA1P28370 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SMARCA1P28370 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SMARCA1P28370 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
SMARCA1P28370 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
SMARCA1P28370 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC19.12■□□□□ 0.65
SMARCA1P28370 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SMARCA1P28370 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SMARCA1P28370 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
SMARCA1P28370 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SMARCA1P28370 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SMARCA1P28370 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
SMARCA1P28370 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SMARCA1P28370 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SMARCA1P28370 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC19.11■□□□□ 0.65
SMARCA1P28370 AC073439.1-201ENST00000624121 1774 ntBASIC19.11■□□□□ 0.65
SMARCA1P28370 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
SMARCA1P28370 NARF-206ENST00000457415 1668 ntTSL 5 BASIC19.11■□□□□ 0.65
SMARCA1P28370 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
SMARCA1P28370 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC19.11■□□□□ 0.65
SMARCA1P28370 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
SMARCA1P28370 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
SMARCA1P28370 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
SMARCA1P28370 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
SMARCA1P28370 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SMARCA1P28370 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SMARCA1P28370 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SMARCA1P28370 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SMARCA1P28370 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SMARCA1P28370 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC19.11■□□□□ 0.65
SMARCA1P28370 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
SMARCA1P28370 PRYP6-201ENST00000514804 343 ntBASIC19.11■□□□□ 0.65
SMARCA1P28370 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC19.11■□□□□ 0.65
SMARCA1P28370 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SMARCA1P28370 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
SMARCA1P28370 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
SMARCA1P28370 AC093520.2-201ENST00000561830 333 ntBASIC19.11■□□□□ 0.65
SMARCA1P28370 AP000842.3-202ENST00000569238 1080 ntBASIC19.11■□□□□ 0.65
SMARCA1P28370 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC19.11■□□□□ 0.65
SMARCA1P28370 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC19.11■□□□□ 0.65
SMARCA1P28370 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC19.11■□□□□ 0.65
SMARCA1P28370 FHL2-212ENST00000607522 759 ntTSL 2 BASIC19.11■□□□□ 0.65
SMARCA1P28370 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC19.11■□□□□ 0.65
SMARCA1P28370 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC19.11■□□□□ 0.65
SMARCA1P28370 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
SMARCA1P28370 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SMARCA1P28370 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SMARCA1P28370 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
SMARCA1P28370 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC19.11■□□□□ 0.65
SMARCA1P28370 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SMARCA1P28370 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
SMARCA1P28370 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SMARCA1P28370 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SMARCA1P28370 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
SMARCA1P28370 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SMARCA1P28370 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SMARCA1P28370 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC19.11■□□□□ 0.65
SMARCA1P28370 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SMARCA1P28370 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SMARCA1P28370 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SMARCA1P28370 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SMARCA1P28370 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC19.1■□□□□ 0.65
SMARCA1P28370 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
SMARCA1P28370 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SMARCA1P28370 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
SMARCA1P28370 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
SMARCA1P28370 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SMARCA1P28370 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC19.1■□□□□ 0.65
SMARCA1P28370 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
SMARCA1P28370 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SMARCA1P28370 AL627223.1-201ENST00000416693 442 ntBASIC19.1■□□□□ 0.65
SMARCA1P28370 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC19.1■□□□□ 0.65
SMARCA1P28370 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms