Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HLA-DMBP28068 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC12.82□□□□□ -0.36
HLA-DMBP28068 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC12.82□□□□□ -0.36
HLA-DMBP28068 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HLA-DMBP28068 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC12.82□□□□□ -0.36
HLA-DMBP28068 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HLA-DMBP28068 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HLA-DMBP28068 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HLA-DMBP28068 DFFB-203ENST00000341385 572 ntTSL 5 BASIC12.82□□□□□ -0.36
HLA-DMBP28068 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
HLA-DMBP28068 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC12.82□□□□□ -0.36
HLA-DMBP28068 TLE1-202ENST00000376484 666 ntTSL 3 BASIC12.82□□□□□ -0.36
HLA-DMBP28068 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC12.82□□□□□ -0.36
HLA-DMBP28068 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HLA-DMBP28068 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC12.82□□□□□ -0.36
HLA-DMBP28068 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC12.82□□□□□ -0.36
HLA-DMBP28068 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC12.82□□□□□ -0.36
HLA-DMBP28068 KRT16P4-201ENST00000453883 522 ntBASIC12.82□□□□□ -0.36
HLA-DMBP28068 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
HLA-DMBP28068 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC12.82□□□□□ -0.36
HLA-DMBP28068 AP001269.4-201ENST00000609611 512 ntBASIC12.82□□□□□ -0.36
HLA-DMBP28068 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC12.82□□□□□ -0.36
HLA-DMBP28068 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
HLA-DMBP28068 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HLA-DMBP28068 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HLA-DMBP28068 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
HLA-DMBP28068 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
HLA-DMBP28068 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
HLA-DMBP28068 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
HLA-DMBP28068 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
HLA-DMBP28068 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
HLA-DMBP28068 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HLA-DMBP28068 GCK-209ENST00000616242 2260 ntTSL 5 BASIC12.82□□□□□ -0.36
HLA-DMBP28068 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC12.82□□□□□ -0.36
HLA-DMBP28068 PC-204ENST00000524491 1714 ntTSL 2 BASIC12.82□□□□□ -0.36
HLA-DMBP28068 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HLA-DMBP28068 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
HLA-DMBP28068 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC12.81□□□□□ -0.36
HLA-DMBP28068 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DMBP28068 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC12.81□□□□□ -0.36
HLA-DMBP28068 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DMBP28068 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DMBP28068 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC12.81□□□□□ -0.36
HLA-DMBP28068 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DMBP28068 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC12.81□□□□□ -0.36
HLA-DMBP28068 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DMBP28068 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
HLA-DMBP28068 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DMBP28068 SIGLEC16-201ENST00000599858 1437 ntBASIC12.81□□□□□ -0.36
HLA-DMBP28068 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DMBP28068 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DMBP28068 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DMBP28068 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DMBP28068 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DMBP28068 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DMBP28068 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DMBP28068 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DMBP28068 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC12.81□□□□□ -0.36
HLA-DMBP28068 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DMBP28068 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC12.81□□□□□ -0.36
HLA-DMBP28068 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DMBP28068 FOS-208ENST00000555686 1496 ntTSL 2 BASIC12.81□□□□□ -0.36
HLA-DMBP28068 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DMBP28068 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DMBP28068 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DMBP28068 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DMBP28068 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DMBP28068 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DMBP28068 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC12.81□□□□□ -0.36
HLA-DMBP28068 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DMBP28068 AC132008.2-207ENST00000454517 770 ntBASIC12.81□□□□□ -0.36
HLA-DMBP28068 AP002490.2-201ENST00000524791 560 ntBASIC12.81□□□□□ -0.36
HLA-DMBP28068 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC12.81□□□□□ -0.36
HLA-DMBP28068 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC12.81□□□□□ -0.36
HLA-DMBP28068 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC12.81□□□□□ -0.36
HLA-DMBP28068 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DMBP28068 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DMBP28068 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DMBP28068 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC12.81□□□□□ -0.36
HLA-DMBP28068 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DMBP28068 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DMBP28068 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DMBP28068 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DMBP28068 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC12.81□□□□□ -0.36
HLA-DMBP28068 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DMBP28068 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DMBP28068 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
HLA-DMBP28068 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DMBP28068 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DMBP28068 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC12.81□□□□□ -0.36
HLA-DMBP28068 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DMBP28068 AC243591.1-201ENST00000452967 1364 ntBASIC12.81□□□□□ -0.36
HLA-DMBP28068 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC12.81□□□□□ -0.36
HLA-DMBP28068 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DMBP28068 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DMBP28068 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DMBP28068 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HLA-DMBP28068 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HLA-DMBP28068 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HLA-DMBP28068 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms