Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL6A1P12109 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL6A1P12109 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL6A1P12109 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL6A1P12109 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL6A1P12109 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.31■□□□□ 0.52
COL6A1P12109 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL6A1P12109 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC18.3■□□□□ 0.52
COL6A1P12109 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL6A1P12109 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
COL6A1P12109 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
COL6A1P12109 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL6A1P12109 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL6A1P12109 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL6A1P12109 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL6A1P12109 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC18.3■□□□□ 0.52
COL6A1P12109 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL6A1P12109 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL6A1P12109 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL6A1P12109 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL6A1P12109 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL6A1P12109 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC18.3■□□□□ 0.52
COL6A1P12109 BOLA2P3-201ENST00000404566 256 ntBASIC18.3■□□□□ 0.52
COL6A1P12109 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC18.3■□□□□ 0.52
COL6A1P12109 FTH1-202ENST00000526640 786 ntTSL 2 BASIC18.3■□□□□ 0.52
COL6A1P12109 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
COL6A1P12109 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC18.3■□□□□ 0.52
COL6A1P12109 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC18.3■□□□□ 0.52
COL6A1P12109 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC18.3■□□□□ 0.52
COL6A1P12109 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
COL6A1P12109 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC18.3■□□□□ 0.52
COL6A1P12109 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL6A1P12109 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL6A1P12109 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL6A1P12109 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
COL6A1P12109 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC18.3■□□□□ 0.52
COL6A1P12109 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
COL6A1P12109 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL6A1P12109 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL6A1P12109 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC18.3■□□□□ 0.52
COL6A1P12109 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC18.3■□□□□ 0.52
COL6A1P12109 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL6A1P12109 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL6A1P12109 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC18.3■□□□□ 0.52
COL6A1P12109 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC18.3■□□□□ 0.52
COL6A1P12109 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC18.29■□□□□ 0.52
COL6A1P12109 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL6A1P12109 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL6A1P12109 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
COL6A1P12109 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC18.29■□□□□ 0.52
COL6A1P12109 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC18.29■□□□□ 0.52
COL6A1P12109 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC18.29■□□□□ 0.52
COL6A1P12109 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL6A1P12109 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
COL6A1P12109 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
COL6A1P12109 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL6A1P12109 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC18.29■□□□□ 0.52
COL6A1P12109 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
COL6A1P12109 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
COL6A1P12109 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
COL6A1P12109 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
COL6A1P12109 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC18.29■□□□□ 0.52
COL6A1P12109 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC18.29■□□□□ 0.52
COL6A1P12109 SLC25A1P3-201ENST00000395415 828 ntBASIC18.29■□□□□ 0.52
COL6A1P12109 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL6A1P12109 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC18.29■□□□□ 0.52
COL6A1P12109 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
COL6A1P12109 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC18.29■□□□□ 0.52
COL6A1P12109 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC18.29■□□□□ 0.52
COL6A1P12109 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL6A1P12109 CROCCP4-201ENST00000457096 498 ntBASIC18.29■□□□□ 0.52
COL6A1P12109 SERBP1P3-201ENST00000459980 809 ntBASIC18.29■□□□□ 0.52
COL6A1P12109 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC18.29■□□□□ 0.52
COL6A1P12109 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC18.29■□□□□ 0.52
COL6A1P12109 AC093726.1-201ENST00000608064 963 ntBASIC18.29■□□□□ 0.52
COL6A1P12109 WFDC1-204ENST00000613603 549 ntBASIC18.29■□□□□ 0.52
COL6A1P12109 MIR6869-201ENST00000619434 62 ntBASIC18.29■□□□□ 0.52
COL6A1P12109 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC18.29■□□□□ 0.52
COL6A1P12109 AL033527.5-202ENST00000641632 1098 ntBASIC18.29■□□□□ 0.52
COL6A1P12109 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC18.29■□□□□ 0.52
COL6A1P12109 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL6A1P12109 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL6A1P12109 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC18.29■□□□□ 0.52
COL6A1P12109 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL6A1P12109 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC18.28■□□□□ 0.52
COL6A1P12109 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL6A1P12109 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC18.28■□□□□ 0.52
COL6A1P12109 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL6A1P12109 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC18.28■□□□□ 0.52
COL6A1P12109 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC18.28■□□□□ 0.52
COL6A1P12109 AC092933.1-201ENST00000393644 945 ntBASIC18.28■□□□□ 0.52
COL6A1P12109 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL6A1P12109 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC18.28■□□□□ 0.52
COL6A1P12109 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC18.28■□□□□ 0.52
COL6A1P12109 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC18.28■□□□□ 0.52
COL6A1P12109 AL589987.1-201ENST00000453380 819 ntBASIC18.28■□□□□ 0.52
COL6A1P12109 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC18.28■□□□□ 0.52
COL6A1P12109 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL6A1P12109 SDHAP3-202ENST00000515467 728 ntBASIC18.28■□□□□ 0.52
COL6A1P12109 AC104989.1-201ENST00000519711 778 ntBASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms