Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC17.55■□□□□ 0.4
APOEP02649 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC17.55■□□□□ 0.4
APOEP02649 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
APOEP02649 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC17.55■□□□□ 0.4
APOEP02649 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC17.55■□□□□ 0.4
APOEP02649 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
APOEP02649 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
APOEP02649 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
APOEP02649 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC17.55■□□□□ 0.4
APOEP02649 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
APOEP02649 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
APOEP02649 IMP4-203ENST00000409935 958 ntTSL 5 BASIC17.55■□□□□ 0.4
APOEP02649 AC023274.1-201ENST00000418278 595 ntBASIC17.55■□□□□ 0.4
APOEP02649 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC17.55■□□□□ 0.4
APOEP02649 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
APOEP02649 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC17.55■□□□□ 0.4
APOEP02649 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC17.55■□□□□ 0.4
APOEP02649 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
APOEP02649 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
APOEP02649 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC17.55■□□□□ 0.4
APOEP02649 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
APOEP02649 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
APOEP02649 CA12-203ENST00000422263 2556 ntTSL 2 BASIC17.55■□□□□ 0.4
APOEP02649 AC092068.3-201ENST00000587894 2016 ntBASIC17.55■□□□□ 0.4
APOEP02649 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC17.55■□□□□ 0.4
APOEP02649 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
APOEP02649 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
APOEP02649 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
APOEP02649 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
APOEP02649 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
APOEP02649 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC17.55■□□□□ 0.4
APOEP02649 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
APOEP02649 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
APOEP02649 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
APOEP02649 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
APOEP02649 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
APOEP02649 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
APOEP02649 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
APOEP02649 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC17.54■□□□□ 0.4
APOEP02649 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
APOEP02649 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC17.54■□□□□ 0.4
APOEP02649 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
APOEP02649 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
APOEP02649 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
APOEP02649 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
APOEP02649 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
APOEP02649 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
APOEP02649 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
APOEP02649 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC17.54■□□□□ 0.4
APOEP02649 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC17.54■□□□□ 0.4
APOEP02649 SMN2-210ENST00000511812 867 ntTSL 2 BASIC17.54■□□□□ 0.4
APOEP02649 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC17.54■□□□□ 0.4
APOEP02649 KRT19P2-202ENST00000557173 1012 ntBASIC17.54■□□□□ 0.4
APOEP02649 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC17.54■□□□□ 0.4
APOEP02649 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC17.54■□□□□ 0.4
APOEP02649 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
APOEP02649 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC17.54■□□□□ 0.4
APOEP02649 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC17.54■□□□□ 0.4
APOEP02649 UBALD1-205ENST00000590891 2641 ntBASIC17.54■□□□□ 0.4
APOEP02649 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
APOEP02649 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC17.54■□□□□ 0.4
APOEP02649 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
APOEP02649 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
APOEP02649 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
APOEP02649 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
APOEP02649 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
APOEP02649 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC17.54■□□□□ 0.4
APOEP02649 AC025580.3-201ENST00000617932 1424 ntBASIC17.54■□□□□ 0.4
APOEP02649 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
APOEP02649 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
APOEP02649 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC17.54■□□□□ 0.4
APOEP02649 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC17.54■□□□□ 0.4
APOEP02649 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC17.53■□□□□ 0.4
APOEP02649 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC17.53■□□□□ 0.4
APOEP02649 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
APOEP02649 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC17.53■□□□□ 0.4
APOEP02649 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
APOEP02649 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
APOEP02649 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
APOEP02649 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC17.53■□□□□ 0.4
APOEP02649 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
APOEP02649 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
APOEP02649 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
APOEP02649 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
APOEP02649 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
APOEP02649 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
APOEP02649 BX842568.4-201ENST00000421222 227 ntBASIC17.53■□□□□ 0.4
APOEP02649 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
APOEP02649 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC17.53■□□□□ 0.4
APOEP02649 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
APOEP02649 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC17.53■□□□□ 0.4
APOEP02649 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC17.53■□□□□ 0.4
APOEP02649 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC17.53■□□□□ 0.4
APOEP02649 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC17.53■□□□□ 0.4
APOEP02649 AL645728.2-201ENST00000641974 660 ntBASIC17.53■□□□□ 0.4
APOEP02649 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
APOEP02649 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
APOEP02649 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
APOEP02649 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC17.53■□□□□ 0.4
APOEP02649 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms