Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
COL4A1P02462 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC20.18■□□□□ 0.82
COL4A1P02462 AC007431.3-201ENST00000623221 587 ntBASIC20.18■□□□□ 0.82
COL4A1P02462 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC20.18■□□□□ 0.82
COL4A1P02462 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL4A1P02462 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL4A1P02462 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
COL4A1P02462 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL4A1P02462 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC20.18■□□□□ 0.82
COL4A1P02462 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC20.17■□□□□ 0.82
COL4A1P02462 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A1P02462 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A1P02462 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC20.17■□□□□ 0.82
COL4A1P02462 KRT8P12-202ENST00000472924 1397 ntBASIC20.17■□□□□ 0.82
COL4A1P02462 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC20.17■□□□□ 0.82
COL4A1P02462 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A1P02462 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A1P02462 AC098850.1-201ENST00000419919 790 ntBASIC20.17■□□□□ 0.82
COL4A1P02462 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
COL4A1P02462 HILS1-202ENST00000545329 423 ntBASIC20.17■□□□□ 0.82
COL4A1P02462 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC20.17■□□□□ 0.82
COL4A1P02462 AC132938.2-201ENST00000579188 680 ntBASIC20.17■□□□□ 0.82
COL4A1P02462 AL591163.1-201ENST00000641757 987 ntBASIC20.17■□□□□ 0.82
COL4A1P02462 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC20.17■□□□□ 0.82
COL4A1P02462 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
COL4A1P02462 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
COL4A1P02462 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC20.17■□□□□ 0.82
COL4A1P02462 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A1P02462 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A1P02462 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A1P02462 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
COL4A1P02462 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC20.17■□□□□ 0.82
COL4A1P02462 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC20.17■□□□□ 0.82
COL4A1P02462 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A1P02462 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A1P02462 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC20.17■□□□□ 0.82
COL4A1P02462 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A1P02462 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A1P02462 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A1P02462 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A1P02462 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A1P02462 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A1P02462 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC20.16■□□□□ 0.82
COL4A1P02462 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC20.16■□□□□ 0.82
COL4A1P02462 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC20.16■□□□□ 0.82
COL4A1P02462 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC20.16■□□□□ 0.82
COL4A1P02462 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A1P02462 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
COL4A1P02462 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A1P02462 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
COL4A1P02462 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A1P02462 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC20.16■□□□□ 0.82
COL4A1P02462 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC20.16■□□□□ 0.82
COL4A1P02462 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A1P02462 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC20.16■□□□□ 0.82
COL4A1P02462 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A1P02462 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
COL4A1P02462 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A1P02462 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC20.16■□□□□ 0.82
COL4A1P02462 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A1P02462 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A1P02462 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A1P02462 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC20.16■□□□□ 0.82
COL4A1P02462 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC20.16■□□□□ 0.82
COL4A1P02462 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A1P02462 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A1P02462 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A1P02462 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC20.16■□□□□ 0.82
COL4A1P02462 RN7SL618P-201ENST00000477850 296 ntBASIC20.16■□□□□ 0.82
COL4A1P02462 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A1P02462 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A1P02462 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A1P02462 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC20.16■□□□□ 0.82
COL4A1P02462 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A1P02462 AC008494.3-201ENST00000606615 944 ntBASIC20.16■□□□□ 0.82
COL4A1P02462 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC20.16■□□□□ 0.82
COL4A1P02462 AL109936.8-201ENST00000641772 604 ntBASIC20.16■□□□□ 0.82
COL4A1P02462 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A1P02462 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC20.16■□□□□ 0.82
COL4A1P02462 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
COL4A1P02462 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL4A1P02462 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
COL4A1P02462 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL4A1P02462 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC20.15■□□□□ 0.82
COL4A1P02462 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
COL4A1P02462 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
COL4A1P02462 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC20.15■□□□□ 0.82
COL4A1P02462 AP001094.4-201ENST00000579008 2176 ntBASIC20.15■□□□□ 0.82
COL4A1P02462 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC20.15■□□□□ 0.82
COL4A1P02462 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
COL4A1P02462 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC20.15■□□□□ 0.82
COL4A1P02462 SPDYE19P-201ENST00000338590 713 ntBASIC20.15■□□□□ 0.82
COL4A1P02462 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC20.15■□□□□ 0.82
COL4A1P02462 AC114501.2-201ENST00000439631 535 ntBASIC20.15■□□□□ 0.82
COL4A1P02462 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC20.15■□□□□ 0.82
COL4A1P02462 AC023310.3-201ENST00000557027 670 ntBASIC20.15■□□□□ 0.82
COL4A1P02462 AC100756.1-201ENST00000562736 682 ntBASIC20.15■□□□□ 0.82
COL4A1P02462 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC20.15■□□□□ 0.82
COL4A1P02462 AC138749.3-201ENST00000567691 622 ntBASIC20.15■□□□□ 0.82
COL4A1P02462 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms