Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SEMA3DO95025 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SEMA3DO95025 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
SEMA3DO95025 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
SEMA3DO95025 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
SEMA3DO95025 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
SEMA3DO95025 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC16.08■□□□□ 0.17
SEMA3DO95025 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
SEMA3DO95025 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
SEMA3DO95025 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
SEMA3DO95025 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
SEMA3DO95025 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SEMA3DO95025 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
SEMA3DO95025 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
SEMA3DO95025 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SEMA3DO95025 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC16.08■□□□□ 0.16
SEMA3DO95025 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SEMA3DO95025 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC16.08■□□□□ 0.16
SEMA3DO95025 MOK-208ENST00000519058 917 ntTSL 2 BASIC16.08■□□□□ 0.16
SEMA3DO95025 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC16.08■□□□□ 0.16
SEMA3DO95025 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC16.08■□□□□ 0.16
SEMA3DO95025 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
SEMA3DO95025 AC005412.3-201ENST00000580309 715 ntBASIC16.08■□□□□ 0.16
SEMA3DO95025 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC16.08■□□□□ 0.16
SEMA3DO95025 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC16.08■□□□□ 0.16
SEMA3DO95025 AC148477.8-201ENST00000624298 468 ntBASIC16.08■□□□□ 0.16
SEMA3DO95025 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC16.08■□□□□ 0.16
SEMA3DO95025 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SEMA3DO95025 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
SEMA3DO95025 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SEMA3DO95025 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SEMA3DO95025 AL353732.1-201ENST00000569618 1459 ntBASIC16.08■□□□□ 0.16
SEMA3DO95025 AP002414.3-201ENST00000589352 1468 ntBASIC16.08■□□□□ 0.16
SEMA3DO95025 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SEMA3DO95025 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC16.08■□□□□ 0.16
SEMA3DO95025 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SEMA3DO95025 AC103702.1-201ENST00000548801 2630 ntBASIC16.08■□□□□ 0.16
SEMA3DO95025 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC16.08■□□□□ 0.16
SEMA3DO95025 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC16.08■□□□□ 0.16
SEMA3DO95025 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SEMA3DO95025 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SEMA3DO95025 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC16.07■□□□□ 0.16
SEMA3DO95025 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC16.07■□□□□ 0.16
SEMA3DO95025 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SEMA3DO95025 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SEMA3DO95025 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC16.07■□□□□ 0.16
SEMA3DO95025 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
SEMA3DO95025 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
SEMA3DO95025 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
SEMA3DO95025 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SEMA3DO95025 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
SEMA3DO95025 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SEMA3DO95025 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SEMA3DO95025 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
SEMA3DO95025 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SEMA3DO95025 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SEMA3DO95025 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SEMA3DO95025 AL031284.1-201ENST00000419297 478 ntBASIC16.07■□□□□ 0.16
SEMA3DO95025 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC16.07■□□□□ 0.16
SEMA3DO95025 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
SEMA3DO95025 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC16.07■□□□□ 0.16
SEMA3DO95025 PP7080-204ENST00000510714 601 ntTSL 3 BASIC16.07■□□□□ 0.16
SEMA3DO95025 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC16.07■□□□□ 0.16
SEMA3DO95025 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC16.07■□□□□ 0.16
SEMA3DO95025 PRKN-208ENST00000610470 531 ntTSL 2 BASIC16.07■□□□□ 0.16
SEMA3DO95025 PRKN-209ENST00000612485 225 ntTSL 5 BASIC16.07■□□□□ 0.16
SEMA3DO95025 BSG-214ENST00000614867 960 ntTSL 3 BASIC16.07■□□□□ 0.16
SEMA3DO95025 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SEMA3DO95025 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SEMA3DO95025 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
SEMA3DO95025 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC16.07■□□□□ 0.16
SEMA3DO95025 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC16.07■□□□□ 0.16
SEMA3DO95025 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SEMA3DO95025 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SEMA3DO95025 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC16.07■□□□□ 0.16
SEMA3DO95025 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SEMA3DO95025 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC16.07■□□□□ 0.16
SEMA3DO95025 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC16.07■□□□□ 0.16
SEMA3DO95025 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC16.07■□□□□ 0.16
SEMA3DO95025 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
SEMA3DO95025 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SEMA3DO95025 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
SEMA3DO95025 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC16.07■□□□□ 0.16
SEMA3DO95025 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SEMA3DO95025 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SEMA3DO95025 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
SEMA3DO95025 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
SEMA3DO95025 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
SEMA3DO95025 PCDHA14-201ENST00000506751 2298 ntBASIC16.06■□□□□ 0.16
SEMA3DO95025 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
SEMA3DO95025 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC16.06■□□□□ 0.16
SEMA3DO95025 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
SEMA3DO95025 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
SEMA3DO95025 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SEMA3DO95025 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SEMA3DO95025 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC16.06■□□□□ 0.16
SEMA3DO95025 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SEMA3DO95025 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC16.06■□□□□ 0.16
SEMA3DO95025 MRPL20P1-201ENST00000400819 433 ntBASIC16.06■□□□□ 0.16
SEMA3DO95025 CENPM-204ENST00000402420 688 ntTSL 5 BASIC16.06■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms