Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.05
LMX1BO60663 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
LMX1BO60663 AC005052.1-201ENST00000625181 2492 ntBASIC14.77□□□□□ -0.05
LMX1BO60663 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC14.77□□□□□ -0.05
LMX1BO60663 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC14.77□□□□□ -0.05
LMX1BO60663 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
LMX1BO60663 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
LMX1BO60663 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC14.77□□□□□ -0.05
LMX1BO60663 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
LMX1BO60663 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
LMX1BO60663 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
LMX1BO60663 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
LMX1BO60663 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC14.77□□□□□ -0.05
LMX1BO60663 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
LMX1BO60663 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
LMX1BO60663 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
LMX1BO60663 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
LMX1BO60663 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.05
LMX1BO60663 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
LMX1BO60663 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC14.76□□□□□ -0.05
LMX1BO60663 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC14.76□□□□□ -0.05
LMX1BO60663 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
LMX1BO60663 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LMX1BO60663 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
LMX1BO60663 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
LMX1BO60663 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC14.76□□□□□ -0.05
LMX1BO60663 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LMX1BO60663 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
LMX1BO60663 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LMX1BO60663 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LMX1BO60663 AC132872.4-202ENST00000622924 2756 ntBASIC14.76□□□□□ -0.05
LMX1BO60663 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LMX1BO60663 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LMX1BO60663 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
LMX1BO60663 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LMX1BO60663 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC14.76□□□□□ -0.05
LMX1BO60663 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
LMX1BO60663 LBH-204ENST00000406087 559 ntTSL 4 BASIC14.76□□□□□ -0.05
LMX1BO60663 HNRNPA1P28-201ENST00000424481 961 ntBASIC14.76□□□□□ -0.05
LMX1BO60663 ACTG1P4-201ENST00000425123 1122 ntBASIC14.76□□□□□ -0.05
LMX1BO60663 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC14.76□□□□□ -0.05
LMX1BO60663 DNAJB3-201ENST00000446806 729 ntBASIC14.76□□□□□ -0.05
LMX1BO60663 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
LMX1BO60663 RNA5SP415-201ENST00000517246 115 ntBASIC14.76□□□□□ -0.05
LMX1BO60663 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC14.76□□□□□ -0.05
LMX1BO60663 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC14.76□□□□□ -0.05
LMX1BO60663 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
LMX1BO60663 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC14.76□□□□□ -0.05
LMX1BO60663 COX5A-202ENST00000562233 441 ntTSL 3 BASIC14.76□□□□□ -0.05
LMX1BO60663 AC034105.1-201ENST00000563488 319 ntBASIC14.76□□□□□ -0.05
LMX1BO60663 PAM16-208ENST00000573553 722 ntTSL 2 BASIC14.76□□□□□ -0.05
LMX1BO60663 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
LMX1BO60663 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
LMX1BO60663 AC010327.4-202ENST00000591484 748 ntBASIC14.76□□□□□ -0.05
LMX1BO60663 AL139288.1-201ENST00000623748 933 ntBASIC14.76□□□□□ -0.05
LMX1BO60663 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LMX1BO60663 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
LMX1BO60663 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
LMX1BO60663 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
LMX1BO60663 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LMX1BO60663 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
LMX1BO60663 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC14.76□□□□□ -0.05
LMX1BO60663 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LMX1BO60663 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
LMX1BO60663 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC14.76□□□□□ -0.05
LMX1BO60663 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC14.76□□□□□ -0.05
LMX1BO60663 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LMX1BO60663 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC14.76□□□□□ -0.05
LMX1BO60663 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC14.76□□□□□ -0.05
LMX1BO60663 AMT-206ENST00000458307 1860 ntTSL 2 BASIC14.76□□□□□ -0.05
LMX1BO60663 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
LMX1BO60663 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC14.76□□□□□ -0.05
LMX1BO60663 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LMX1BO60663 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
LMX1BO60663 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
LMX1BO60663 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
LMX1BO60663 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LMX1BO60663 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LMX1BO60663 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
LMX1BO60663 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
LMX1BO60663 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LMX1BO60663 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LMX1BO60663 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC14.75□□□□□ -0.05
LMX1BO60663 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC14.75□□□□□ -0.05
LMX1BO60663 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
LMX1BO60663 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
LMX1BO60663 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
LMX1BO60663 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
LMX1BO60663 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
LMX1BO60663 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC14.75□□□□□ -0.05
LMX1BO60663 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC14.75□□□□□ -0.05
LMX1BO60663 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC14.75□□□□□ -0.05
LMX1BO60663 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
LMX1BO60663 BANP-204ENST00000393208 2283 ntTSL 2 BASIC14.75□□□□□ -0.05
LMX1BO60663 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
LMX1BO60663 GCK-209ENST00000616242 2260 ntTSL 5 BASIC14.75□□□□□ -0.05
LMX1BO60663 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
LMX1BO60663 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LMX1BO60663 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
LMX1BO60663 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms