Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
PRKNO60260 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
PRKNO60260 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
PRKNO60260 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
PRKNO60260 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC15.57■□□□□ 0.08
PRKNO60260 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
PRKNO60260 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PRKNO60260 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PRKNO60260 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC15.57■□□□□ 0.08
PRKNO60260 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
PRKNO60260 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PRKNO60260 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
PRKNO60260 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
PRKNO60260 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PRKNO60260 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
PRKNO60260 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC15.57■□□□□ 0.08
PRKNO60260 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PRKNO60260 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PRKNO60260 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC15.57■□□□□ 0.08
PRKNO60260 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC15.57■□□□□ 0.08
PRKNO60260 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC15.57■□□□□ 0.08
PRKNO60260 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC15.57■□□□□ 0.08
PRKNO60260 AC140658.5-201ENST00000438532 169 ntBASIC15.57■□□□□ 0.08
PRKNO60260 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC15.57■□□□□ 0.08
PRKNO60260 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC15.57■□□□□ 0.08
PRKNO60260 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC15.57■□□□□ 0.08
PRKNO60260 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC15.57■□□□□ 0.08
PRKNO60260 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC15.57■□□□□ 0.08
PRKNO60260 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC15.57■□□□□ 0.08
PRKNO60260 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC15.57■□□□□ 0.08
PRKNO60260 TUBB8P12-201ENST00000308911 1335 ntBASIC15.57■□□□□ 0.08
PRKNO60260 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
PRKNO60260 TUBB7P-202ENST00000428444 1305 ntBASIC15.57■□□□□ 0.08
PRKNO60260 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PRKNO60260 TUBB8P7-204ENST00000567960 1332 ntBASIC15.57■□□□□ 0.08
PRKNO60260 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PRKNO60260 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC15.57■□□□□ 0.08
PRKNO60260 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PRKNO60260 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
PRKNO60260 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC15.57■□□□□ 0.08
PRKNO60260 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PRKNO60260 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PRKNO60260 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC15.57■□□□□ 0.08
PRKNO60260 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC15.57■□□□□ 0.08
PRKNO60260 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PRKNO60260 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC15.57■□□□□ 0.08
PRKNO60260 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC15.57■□□□□ 0.08
PRKNO60260 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PRKNO60260 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PRKNO60260 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PRKNO60260 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PRKNO60260 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC15.56■□□□□ 0.08
PRKNO60260 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC15.56■□□□□ 0.08
PRKNO60260 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
PRKNO60260 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PRKNO60260 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PRKNO60260 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PRKNO60260 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC15.56■□□□□ 0.08
PRKNO60260 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC15.56■□□□□ 0.08
PRKNO60260 HCG4-201ENST00000418983 998 ntBASIC15.56■□□□□ 0.08
PRKNO60260 RPS8P6-201ENST00000426177 609 ntBASIC15.56■□□□□ 0.08
PRKNO60260 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC15.56■□□□□ 0.08
PRKNO60260 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PRKNO60260 MKNK2P1-201ENST00000437526 628 ntBASIC15.56■□□□□ 0.08
PRKNO60260 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC15.56■□□□□ 0.08
PRKNO60260 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC15.56■□□□□ 0.08
PRKNO60260 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC15.56■□□□□ 0.08
PRKNO60260 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC15.56■□□□□ 0.08
PRKNO60260 AC087641.1-201ENST00000557561 1021 ntBASIC15.56■□□□□ 0.08
PRKNO60260 CD7-202ENST00000578509 925 ntTSL 3 BASIC15.56■□□□□ 0.08
PRKNO60260 CYP2A7P1-201ENST00000595391 815 ntBASIC15.56■□□□□ 0.08
PRKNO60260 AC099522.2-201ENST00000607001 744 ntBASIC15.56■□□□□ 0.08
PRKNO60260 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC15.56■□□□□ 0.08
PRKNO60260 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
PRKNO60260 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
PRKNO60260 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC15.56■□□□□ 0.08
PRKNO60260 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PRKNO60260 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC15.56■□□□□ 0.08
PRKNO60260 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
PRKNO60260 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC15.56■□□□□ 0.08
PRKNO60260 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PRKNO60260 ELL2P1-201ENST00000413990 1906 ntBASIC15.56■□□□□ 0.08
PRKNO60260 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PRKNO60260 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PRKNO60260 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
PRKNO60260 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
PRKNO60260 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
PRKNO60260 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
PRKNO60260 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
PRKNO60260 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PRKNO60260 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
PRKNO60260 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
PRKNO60260 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC15.55■□□□□ 0.08
PRKNO60260 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PRKNO60260 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC15.55■□□□□ 0.08
PRKNO60260 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PRKNO60260 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PRKNO60260 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC15.55■□□□□ 0.08
PRKNO60260 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PRKNO60260 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC15.55■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms