Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
MSH4O15457 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
MSH4O15457 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC18.73■□□□□ 0.59
MSH4O15457 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC18.73■□□□□ 0.59
MSH4O15457 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
MSH4O15457 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC18.73■□□□□ 0.59
MSH4O15457 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
MSH4O15457 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
MSH4O15457 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
MSH4O15457 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
MSH4O15457 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
MSH4O15457 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC18.73■□□□□ 0.59
MSH4O15457 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
MSH4O15457 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
MSH4O15457 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
MSH4O15457 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC18.73■□□□□ 0.59
MSH4O15457 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC18.73■□□□□ 0.59
MSH4O15457 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC18.73■□□□□ 0.59
MSH4O15457 AL138918.1-201ENST00000568306 659 ntBASIC18.73■□□□□ 0.59
MSH4O15457 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC18.73■□□□□ 0.59
MSH4O15457 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC18.73■□□□□ 0.59
MSH4O15457 AC027612.4-201ENST00000605371 583 ntBASIC18.73■□□□□ 0.59
MSH4O15457 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC18.73■□□□□ 0.59
MSH4O15457 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
MSH4O15457 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC18.73■□□□□ 0.59
MSH4O15457 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
MSH4O15457 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
MSH4O15457 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
MSH4O15457 NKILA-202ENST00000614771 2598 ntBASIC18.73■□□□□ 0.59
MSH4O15457 AC020916.1-201ENST00000587762 1774 ntBASIC18.73■□□□□ 0.59
MSH4O15457 GPAA1P2-202ENST00000606848 1787 ntBASIC18.73■□□□□ 0.59
MSH4O15457 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
MSH4O15457 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC18.73■□□□□ 0.59
MSH4O15457 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
MSH4O15457 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC18.73■□□□□ 0.59
MSH4O15457 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
MSH4O15457 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
MSH4O15457 NARF-206ENST00000457415 1668 ntTSL 5 BASIC18.73■□□□□ 0.59
MSH4O15457 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC18.73■□□□□ 0.59
MSH4O15457 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
MSH4O15457 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
MSH4O15457 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
MSH4O15457 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
MSH4O15457 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
MSH4O15457 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
MSH4O15457 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC18.72■□□□□ 0.59
MSH4O15457 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
MSH4O15457 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC18.72■□□□□ 0.59
MSH4O15457 DPM2-202ENST00000373110 738 ntTSL 2 BASIC18.72■□□□□ 0.59
MSH4O15457 AL592309.1-201ENST00000443127 649 ntBASIC18.72■□□□□ 0.59
MSH4O15457 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC18.72■□□□□ 0.59
MSH4O15457 KRT18P34-201ENST00000488218 1270 ntBASIC18.72■□□□□ 0.59
MSH4O15457 RNF34-208ENST00000555076 593 ntTSL 3 BASIC18.72■□□□□ 0.59
MSH4O15457 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
MSH4O15457 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC18.72■□□□□ 0.59
MSH4O15457 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
MSH4O15457 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
MSH4O15457 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
MSH4O15457 AC004835.2-201ENST00000603762 682 ntBASIC18.72■□□□□ 0.59
MSH4O15457 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC18.72■□□□□ 0.59
MSH4O15457 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC18.72■□□□□ 0.59
MSH4O15457 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC18.72■□□□□ 0.59
MSH4O15457 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
MSH4O15457 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.72■□□□□ 0.59
MSH4O15457 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
MSH4O15457 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
MSH4O15457 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC18.72■□□□□ 0.59
MSH4O15457 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
MSH4O15457 CA12-203ENST00000422263 2556 ntTSL 2 BASIC18.72■□□□□ 0.59
MSH4O15457 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC18.72■□□□□ 0.59
MSH4O15457 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
MSH4O15457 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
MSH4O15457 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
MSH4O15457 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
MSH4O15457 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC18.71■□□□□ 0.59
MSH4O15457 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
MSH4O15457 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
MSH4O15457 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
MSH4O15457 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
MSH4O15457 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
MSH4O15457 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
MSH4O15457 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC18.71■□□□□ 0.59
MSH4O15457 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
MSH4O15457 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC18.71■□□□□ 0.59
MSH4O15457 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
MSH4O15457 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
MSH4O15457 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
MSH4O15457 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC18.71■□□□□ 0.59
MSH4O15457 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
MSH4O15457 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
MSH4O15457 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
MSH4O15457 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC18.71■□□□□ 0.59
MSH4O15457 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
MSH4O15457 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC18.71■□□□□ 0.59
MSH4O15457 AC092183.1-201ENST00000469884 875 ntBASIC18.71■□□□□ 0.59
MSH4O15457 AC069335.1-201ENST00000489972 472 ntBASIC18.71■□□□□ 0.59
MSH4O15457 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
MSH4O15457 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC18.71■□□□□ 0.59
MSH4O15457 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC18.71■□□□□ 0.59
MSH4O15457 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms