Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LHX3Q9UBR4 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC16.83■□□□□ 0.28
LHX3Q9UBR4 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC16.83■□□□□ 0.28
LHX3Q9UBR4 RPS15-207ENST00000591032 550 ntTSL 3 BASIC16.83■□□□□ 0.28
LHX3Q9UBR4 RPS15-212ENST00000593052 629 ntTSL 2 BASIC16.83■□□□□ 0.28
LHX3Q9UBR4 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC16.83■□□□□ 0.28
LHX3Q9UBR4 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC16.83■□□□□ 0.28
LHX3Q9UBR4 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC16.83■□□□□ 0.28
LHX3Q9UBR4 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC16.83■□□□□ 0.28
LHX3Q9UBR4 NKILA-202ENST00000614771 2598 ntBASIC16.83■□□□□ 0.28
LHX3Q9UBR4 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC16.83■□□□□ 0.28
LHX3Q9UBR4 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LHX3Q9UBR4 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
LHX3Q9UBR4 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LHX3Q9UBR4 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
LHX3Q9UBR4 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC16.82■□□□□ 0.28
LHX3Q9UBR4 GPAA1P2-202ENST00000606848 1787 ntBASIC16.82■□□□□ 0.28
LHX3Q9UBR4 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
LHX3Q9UBR4 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC16.82■□□□□ 0.28
LHX3Q9UBR4 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LHX3Q9UBR4 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC16.82■□□□□ 0.28
LHX3Q9UBR4 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC16.82■□□□□ 0.28
LHX3Q9UBR4 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
LHX3Q9UBR4 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC16.82■□□□□ 0.28
LHX3Q9UBR4 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC16.82■□□□□ 0.28
LHX3Q9UBR4 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LHX3Q9UBR4 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LHX3Q9UBR4 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
LHX3Q9UBR4 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LHX3Q9UBR4 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LHX3Q9UBR4 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LHX3Q9UBR4 BSG-215ENST00000618006 1329 ntTSL 2 BASIC16.82■□□□□ 0.28
LHX3Q9UBR4 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LHX3Q9UBR4 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
LHX3Q9UBR4 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC16.82■□□□□ 0.28
LHX3Q9UBR4 DPM2-202ENST00000373110 738 ntTSL 2 BASIC16.82■□□□□ 0.28
LHX3Q9UBR4 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LHX3Q9UBR4 SPDYE11-202ENST00000450699 704 ntBASIC16.82■□□□□ 0.28
LHX3Q9UBR4 AC079140.1-201ENST00000508039 487 ntBASIC16.82■□□□□ 0.28
LHX3Q9UBR4 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC16.82■□□□□ 0.28
LHX3Q9UBR4 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC16.82■□□□□ 0.28
LHX3Q9UBR4 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC16.82■□□□□ 0.28
LHX3Q9UBR4 SPDYE9P-201ENST00000570642 692 ntBASIC16.82■□□□□ 0.28
LHX3Q9UBR4 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC16.82■□□□□ 0.28
LHX3Q9UBR4 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LHX3Q9UBR4 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LHX3Q9UBR4 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC16.82■□□□□ 0.28
LHX3Q9UBR4 SPDYE10P-202ENST00000612005 668 ntBASIC16.82■□□□□ 0.28
LHX3Q9UBR4 SPDYE8P-202ENST00000612377 668 ntBASIC16.82■□□□□ 0.28
LHX3Q9UBR4 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
LHX3Q9UBR4 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
LHX3Q9UBR4 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC16.82■□□□□ 0.28
LHX3Q9UBR4 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LHX3Q9UBR4 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LHX3Q9UBR4 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LHX3Q9UBR4 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC16.82■□□□□ 0.28
LHX3Q9UBR4 AC092171.3-201ENST00000610122 2651 ntBASIC16.82■□□□□ 0.28
LHX3Q9UBR4 OR6D1P-202ENST00000641007 5290 ntBASIC16.82■□□□□ 0.28
LHX3Q9UBR4 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC16.82■□□□□ 0.28
LHX3Q9UBR4 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC16.81■□□□□ 0.28
LHX3Q9UBR4 GGT3P-204ENST00000453783 1664 ntBASIC16.81■□□□□ 0.28
LHX3Q9UBR4 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC16.81■□□□□ 0.28
LHX3Q9UBR4 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LHX3Q9UBR4 PRORSD1P-202ENST00000563365 2154 ntBASIC16.81■□□□□ 0.28
LHX3Q9UBR4 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC16.81■□□□□ 0.28
LHX3Q9UBR4 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC16.81■□□□□ 0.28
LHX3Q9UBR4 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
LHX3Q9UBR4 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LHX3Q9UBR4 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC16.81■□□□□ 0.28
LHX3Q9UBR4 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC16.81■□□□□ 0.28
LHX3Q9UBR4 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LHX3Q9UBR4 AC004461.1-201ENST00000412461 403 ntBASIC16.81■□□□□ 0.28
LHX3Q9UBR4 AC254562.1-201ENST00000417586 456 ntBASIC16.81■□□□□ 0.28
LHX3Q9UBR4 RN7SL589P-201ENST00000481268 310 ntBASIC16.81■□□□□ 0.28
LHX3Q9UBR4 GATB-205ENST00000508611 605 ntTSL 2 BASIC16.81■□□□□ 0.28
LHX3Q9UBR4 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC16.81■□□□□ 0.28
LHX3Q9UBR4 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
LHX3Q9UBR4 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC16.81■□□□□ 0.28
LHX3Q9UBR4 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC16.81■□□□□ 0.28
LHX3Q9UBR4 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC16.81■□□□□ 0.28
LHX3Q9UBR4 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
LHX3Q9UBR4 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC16.81■□□□□ 0.28
LHX3Q9UBR4 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC16.81■□□□□ 0.28
LHX3Q9UBR4 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LHX3Q9UBR4 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LHX3Q9UBR4 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
LHX3Q9UBR4 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LHX3Q9UBR4 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC16.81■□□□□ 0.28
LHX3Q9UBR4 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LHX3Q9UBR4 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LHX3Q9UBR4 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LHX3Q9UBR4 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LHX3Q9UBR4 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LHX3Q9UBR4 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LHX3Q9UBR4 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LHX3Q9UBR4 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LHX3Q9UBR4 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LHX3Q9UBR4 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
LHX3Q9UBR4 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
LHX3Q9UBR4 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 64.6 ms