Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC17.95■□□□□ 0.46
SIX2Q9NPC8 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SIX2Q9NPC8 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
SIX2Q9NPC8 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
SIX2Q9NPC8 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
SIX2Q9NPC8 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SIX2Q9NPC8 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SIX2Q9NPC8 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SIX2Q9NPC8 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
SIX2Q9NPC8 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SIX2Q9NPC8 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC17.94■□□□□ 0.46
SIX2Q9NPC8 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
SIX2Q9NPC8 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC17.94■□□□□ 0.46
SIX2Q9NPC8 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
SIX2Q9NPC8 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SIX2Q9NPC8 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SIX2Q9NPC8 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC17.94■□□□□ 0.46
SIX2Q9NPC8 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC17.94■□□□□ 0.46
SIX2Q9NPC8 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SIX2Q9NPC8 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SIX2Q9NPC8 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC17.94■□□□□ 0.46
SIX2Q9NPC8 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC17.94■□□□□ 0.46
SIX2Q9NPC8 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
SIX2Q9NPC8 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC17.94■□□□□ 0.46
SIX2Q9NPC8 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC17.94■□□□□ 0.46
SIX2Q9NPC8 RNA5SP415-201ENST00000517246 115 ntBASIC17.94■□□□□ 0.46
SIX2Q9NPC8 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC17.94■□□□□ 0.46
SIX2Q9NPC8 MIR4751-201ENST00000578027 74 ntBASIC17.94■□□□□ 0.46
SIX2Q9NPC8 MIR4515-201ENST00000584082 81 ntBASIC17.94■□□□□ 0.46
SIX2Q9NPC8 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC17.94■□□□□ 0.46
SIX2Q9NPC8 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SIX2Q9NPC8 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
SIX2Q9NPC8 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SIX2Q9NPC8 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
SIX2Q9NPC8 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SIX2Q9NPC8 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SIX2Q9NPC8 HLA-A-201ENST00000376802 1334 ntBASIC17.94■□□□□ 0.46
SIX2Q9NPC8 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC17.94■□□□□ 0.46
SIX2Q9NPC8 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC17.94■□□□□ 0.46
SIX2Q9NPC8 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC17.94■□□□□ 0.46
SIX2Q9NPC8 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SIX2Q9NPC8 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC17.93■□□□□ 0.46
SIX2Q9NPC8 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
SIX2Q9NPC8 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC17.93■□□□□ 0.46
SIX2Q9NPC8 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SIX2Q9NPC8 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SIX2Q9NPC8 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC17.93■□□□□ 0.46
SIX2Q9NPC8 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SIX2Q9NPC8 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC17.93■□□□□ 0.46
SIX2Q9NPC8 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SIX2Q9NPC8 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC17.93■□□□□ 0.46
SIX2Q9NPC8 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
SIX2Q9NPC8 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC17.93■□□□□ 0.46
SIX2Q9NPC8 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC17.93■□□□□ 0.46
SIX2Q9NPC8 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SIX2Q9NPC8 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SIX2Q9NPC8 VN2R19P-201ENST00000442399 1052 ntBASIC17.93■□□□□ 0.46
SIX2Q9NPC8 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC17.93■□□□□ 0.46
SIX2Q9NPC8 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
SIX2Q9NPC8 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
SIX2Q9NPC8 AP001005.1-201ENST00000571755 1248 ntBASIC17.93■□□□□ 0.46
SIX2Q9NPC8 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SIX2Q9NPC8 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC17.93■□□□□ 0.46
SIX2Q9NPC8 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SIX2Q9NPC8 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SIX2Q9NPC8 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SIX2Q9NPC8 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SIX2Q9NPC8 AL596087.1-201ENST00000400979 1969 ntBASIC17.93■□□□□ 0.46
SIX2Q9NPC8 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SIX2Q9NPC8 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SIX2Q9NPC8 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
SIX2Q9NPC8 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC17.93■□□□□ 0.46
SIX2Q9NPC8 HCG11-201ENST00000411553 5696 ntBASIC17.93■□□□□ 0.46
SIX2Q9NPC8 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
SIX2Q9NPC8 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC17.93■□□□□ 0.46
SIX2Q9NPC8 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SIX2Q9NPC8 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC17.93■□□□□ 0.46
SIX2Q9NPC8 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SIX2Q9NPC8 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC17.92■□□□□ 0.46
SIX2Q9NPC8 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
SIX2Q9NPC8 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC17.92■□□□□ 0.46
SIX2Q9NPC8 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC17.92■□□□□ 0.46
SIX2Q9NPC8 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC17.92■□□□□ 0.46
SIX2Q9NPC8 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SIX2Q9NPC8 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC17.92■□□□□ 0.46
SIX2Q9NPC8 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SIX2Q9NPC8 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SIX2Q9NPC8 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
SIX2Q9NPC8 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
SIX2Q9NPC8 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC17.92■□□□□ 0.46
SIX2Q9NPC8 HCG4B-203ENST00000450128 991 ntBASIC17.92■□□□□ 0.46
SIX2Q9NPC8 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC17.92■□□□□ 0.46
SIX2Q9NPC8 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC17.92■□□□□ 0.46
SIX2Q9NPC8 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC17.92■□□□□ 0.46
SIX2Q9NPC8 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC17.92■□□□□ 0.46
SIX2Q9NPC8 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
SIX2Q9NPC8 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SIX2Q9NPC8 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SIX2Q9NPC8 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC17.92■□□□□ 0.46
SIX2Q9NPC8 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms