Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TM9SF3Q9HD45 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TM9SF3Q9HD45 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
TM9SF3Q9HD45 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
TM9SF3Q9HD45 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TM9SF3Q9HD45 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
TM9SF3Q9HD45 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TM9SF3Q9HD45 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TM9SF3Q9HD45 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TM9SF3Q9HD45 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC16.75■□□□□ 0.27
TM9SF3Q9HD45 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TM9SF3Q9HD45 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
TM9SF3Q9HD45 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TM9SF3Q9HD45 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TM9SF3Q9HD45 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
TM9SF3Q9HD45 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC16.75■□□□□ 0.27
TM9SF3Q9HD45 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC16.75■□□□□ 0.27
TM9SF3Q9HD45 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
TM9SF3Q9HD45 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC16.75■□□□□ 0.27
TM9SF3Q9HD45 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC16.75■□□□□ 0.27
TM9SF3Q9HD45 GPS2P2-201ENST00000430745 888 ntBASIC16.75■□□□□ 0.27
TM9SF3Q9HD45 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC16.75■□□□□ 0.27
TM9SF3Q9HD45 RBPMS2P1-201ENST00000437762 623 ntBASIC16.75■□□□□ 0.27
TM9SF3Q9HD45 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC16.75■□□□□ 0.27
TM9SF3Q9HD45 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC16.75■□□□□ 0.27
TM9SF3Q9HD45 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
TM9SF3Q9HD45 IGHV3-62-201ENST00000520057 340 ntBASIC16.75■□□□□ 0.27
TM9SF3Q9HD45 CFL1-212ENST00000531413 636 ntTSL 3 BASIC16.75■□□□□ 0.27
TM9SF3Q9HD45 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TM9SF3Q9HD45 AQP6-203ENST00000551733 849 ntTSL 3 BASIC16.75■□□□□ 0.27
TM9SF3Q9HD45 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TM9SF3Q9HD45 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC16.75■□□□□ 0.27
TM9SF3Q9HD45 AC051619.7-201ENST00000568314 623 ntBASIC16.75■□□□□ 0.27
TM9SF3Q9HD45 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC16.75■□□□□ 0.27
TM9SF3Q9HD45 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TM9SF3Q9HD45 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TM9SF3Q9HD45 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TM9SF3Q9HD45 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TM9SF3Q9HD45 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC16.75■□□□□ 0.27
TM9SF3Q9HD45 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
TM9SF3Q9HD45 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
TM9SF3Q9HD45 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC16.75■□□□□ 0.27
TM9SF3Q9HD45 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TM9SF3Q9HD45 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
TM9SF3Q9HD45 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC16.75■□□□□ 0.27
TM9SF3Q9HD45 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC16.75■□□□□ 0.27
TM9SF3Q9HD45 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC16.75■□□□□ 0.27
TM9SF3Q9HD45 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
TM9SF3Q9HD45 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TM9SF3Q9HD45 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC16.74■□□□□ 0.27
TM9SF3Q9HD45 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
TM9SF3Q9HD45 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
TM9SF3Q9HD45 TUBB3P1-201ENST00000405796 1332 ntBASIC16.74■□□□□ 0.27
TM9SF3Q9HD45 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
TM9SF3Q9HD45 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TM9SF3Q9HD45 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC16.74■□□□□ 0.27
TM9SF3Q9HD45 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC16.74■□□□□ 0.27
TM9SF3Q9HD45 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC16.74■□□□□ 0.27
TM9SF3Q9HD45 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TM9SF3Q9HD45 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
TM9SF3Q9HD45 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC16.74■□□□□ 0.27
TM9SF3Q9HD45 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC16.74■□□□□ 0.27
TM9SF3Q9HD45 AC069262.1-201ENST00000539058 672 ntBASIC16.74■□□□□ 0.27
TM9SF3Q9HD45 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC16.74■□□□□ 0.27
TM9SF3Q9HD45 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC16.74■□□□□ 0.27
TM9SF3Q9HD45 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC16.74■□□□□ 0.27
TM9SF3Q9HD45 AC138761.1-201ENST00000584393 385 ntBASIC16.74■□□□□ 0.27
TM9SF3Q9HD45 AJ011932.1-201ENST00000621707 465 ntBASIC16.74■□□□□ 0.27
TM9SF3Q9HD45 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TM9SF3Q9HD45 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TM9SF3Q9HD45 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
TM9SF3Q9HD45 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
TM9SF3Q9HD45 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TM9SF3Q9HD45 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC16.74■□□□□ 0.27
TM9SF3Q9HD45 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC16.74■□□□□ 0.27
TM9SF3Q9HD45 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
TM9SF3Q9HD45 CROCCP2-202ENST00000412962 2773 ntBASIC16.74■□□□□ 0.27
TM9SF3Q9HD45 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TM9SF3Q9HD45 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC16.74■□□□□ 0.27
TM9SF3Q9HD45 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC16.74■□□□□ 0.27
TM9SF3Q9HD45 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC16.74■□□□□ 0.27
TM9SF3Q9HD45 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TM9SF3Q9HD45 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TM9SF3Q9HD45 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
TM9SF3Q9HD45 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TM9SF3Q9HD45 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.73■□□□□ 0.27
TM9SF3Q9HD45 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC16.73■□□□□ 0.27
TM9SF3Q9HD45 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TM9SF3Q9HD45 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TM9SF3Q9HD45 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
TM9SF3Q9HD45 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TM9SF3Q9HD45 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TM9SF3Q9HD45 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC16.73■□□□□ 0.27
TM9SF3Q9HD45 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC16.73■□□□□ 0.27
TM9SF3Q9HD45 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC16.73■□□□□ 0.27
TM9SF3Q9HD45 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
TM9SF3Q9HD45 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC16.73■□□□□ 0.27
TM9SF3Q9HD45 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TM9SF3Q9HD45 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TM9SF3Q9HD45 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms