Protein–RNA interactions for Protein: Q9BT23

LIMD2, LIM domain-containing protein 2, humanhuman

Predictions only

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD2Q9BT23 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
LIMD2Q9BT23 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
LIMD2Q9BT23 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC10.07□□□□□ -0.8
LIMD2Q9BT23 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC10.07□□□□□ -0.8
LIMD2Q9BT23 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC10.07□□□□□ -0.8
LIMD2Q9BT23 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
LIMD2Q9BT23 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
LIMD2Q9BT23 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC10.07□□□□□ -0.8
LIMD2Q9BT23 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 PHLDB2-204ENST00000431670 6127 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC10.06□□□□□ -0.8
LIMD2Q9BT23 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 DRAXINP1-201ENST00000437611 948 ntBASIC10.06□□□□□ -0.8
LIMD2Q9BT23 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 LINC00265-3P-201ENST00000447588 903 ntBASIC10.06□□□□□ -0.8
LIMD2Q9BT23 MEG3-211ENST00000452514 461 ntTSL 3 BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 FAM86EP-206ENST00000510506 987 ntBASIC10.06□□□□□ -0.8
LIMD2Q9BT23 AC096582.2-201ENST00000510860 516 ntBASIC10.06□□□□□ -0.8
LIMD2Q9BT23 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 TK1-204ENST00000590430 683 ntTSL 3 BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 AC116407.4-201ENST00000623319 1061 ntBASIC10.06□□□□□ -0.8
LIMD2Q9BT23 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 AL731571.1-201ENST00000617058 5428 ntBASIC10.06□□□□□ -0.8
LIMD2Q9BT23 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 ANKRD11-201ENST00000301030 9301 ntAPPRIS P2 TSL 5 BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC10.06□□□□□ -0.8
LIMD2Q9BT23 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
LIMD2Q9BT23 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC10.05□□□□□ -0.8
LIMD2Q9BT23 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC10.05□□□□□ -0.8
LIMD2Q9BT23 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
LIMD2Q9BT23 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC10.05□□□□□ -0.8
LIMD2Q9BT23 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
LIMD2Q9BT23 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC10.05□□□□□ -0.8
LIMD2Q9BT23 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC10.05□□□□□ -0.8
LIMD2Q9BT23 POM121-201ENST00000358357 5320 ntAPPRIS P3 TSL 1 (best) BASIC10.05□□□□□ -0.8
LIMD2Q9BT23 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
LIMD2Q9BT23 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
LIMD2Q9BT23 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC10.05□□□□□ -0.8
LIMD2Q9BT23 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC10.05□□□□□ -0.8
LIMD2Q9BT23 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC10.05□□□□□ -0.8
LIMD2Q9BT23 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC10.05□□□□□ -0.8
LIMD2Q9BT23 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC10.05□□□□□ -0.8
LIMD2Q9BT23 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC10.05□□□□□ -0.8
LIMD2Q9BT23 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
LIMD2Q9BT23 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC10.05□□□□□ -0.8
LIMD2Q9BT23 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC10.05□□□□□ -0.8
LIMD2Q9BT23 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC10.05□□□□□ -0.8
LIMD2Q9BT23 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms