Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 LBH-204ENST00000406087 559 ntTSL 4 BASIC12.96□□□□□ -0.33
CCDC140Q96MF4 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC12.96□□□□□ -0.33
CCDC140Q96MF4 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC12.96□□□□□ -0.33
CCDC140Q96MF4 AC007967.2-201ENST00000432613 625 ntBASIC12.96□□□□□ -0.33
CCDC140Q96MF4 STARD13-205ENST00000439831 945 ntTSL 2 BASIC12.96□□□□□ -0.33
CCDC140Q96MF4 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC12.96□□□□□ -0.33
CCDC140Q96MF4 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC12.96□□□□□ -0.33
CCDC140Q96MF4 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC12.96□□□□□ -0.33
CCDC140Q96MF4 AC096734.2-201ENST00000562054 433 ntBASIC12.96□□□□□ -0.33
CCDC140Q96MF4 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC12.96□□□□□ -0.33
CCDC140Q96MF4 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CCDC140Q96MF4 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC12.96□□□□□ -0.33
CCDC140Q96MF4 PCDHB19P-201ENST00000570871 2371 ntBASIC12.96□□□□□ -0.33
CCDC140Q96MF4 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
CCDC140Q96MF4 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
CCDC140Q96MF4 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
CCDC140Q96MF4 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
CCDC140Q96MF4 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.34
CCDC140Q96MF4 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC12.96□□□□□ -0.34
CCDC140Q96MF4 GGT4P-201ENST00000623672 1708 ntBASIC12.96□□□□□ -0.34
CCDC140Q96MF4 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
CCDC140Q96MF4 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
CCDC140Q96MF4 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
CCDC140Q96MF4 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC12.96□□□□□ -0.34
CCDC140Q96MF4 ALOX12P2-203ENST00000570921 1945 ntBASIC12.96□□□□□ -0.34
CCDC140Q96MF4 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
CCDC140Q96MF4 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.34
CCDC140Q96MF4 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
CCDC140Q96MF4 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 MTRF1LP2-201ENST00000506027 1122 ntBASIC12.95□□□□□ -0.34
CCDC140Q96MF4 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 AL645728.2-201ENST00000641974 660 ntBASIC12.95□□□□□ -0.34
CCDC140Q96MF4 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 GGT3P-204ENST00000453783 1664 ntBASIC12.95□□□□□ -0.34
CCDC140Q96MF4 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CCDC140Q96MF4 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
CCDC140Q96MF4 ZNF259P1-201ENST00000407656 1365 ntBASIC12.94□□□□□ -0.34
CCDC140Q96MF4 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CCDC140Q96MF4 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC12.94□□□□□ -0.34
CCDC140Q96MF4 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CCDC140Q96MF4 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC12.94□□□□□ -0.34
CCDC140Q96MF4 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CCDC140Q96MF4 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC12.94□□□□□ -0.34
CCDC140Q96MF4 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
CCDC140Q96MF4 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC12.94□□□□□ -0.34
CCDC140Q96MF4 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
CCDC140Q96MF4 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CCDC140Q96MF4 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
CCDC140Q96MF4 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CCDC140Q96MF4 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC12.94□□□□□ -0.34
CCDC140Q96MF4 DDT-204ENST00000404092 805 ntTSL 3 BASIC12.94□□□□□ -0.34
CCDC140Q96MF4 HMGA1P7-201ENST00000406908 502 ntBASIC12.94□□□□□ -0.34
CCDC140Q96MF4 RHOQP3-201ENST00000437982 621 ntBASIC12.94□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 80.8 ms