Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
LMX1AQ8TE12 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LMX1AQ8TE12 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC16.27■□□□□ 0.2
LMX1AQ8TE12 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
LMX1AQ8TE12 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC16.27■□□□□ 0.2
LMX1AQ8TE12 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
LMX1AQ8TE12 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC16.27■□□□□ 0.2
LMX1AQ8TE12 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC16.27■□□□□ 0.2
LMX1AQ8TE12 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC16.27■□□□□ 0.2
LMX1AQ8TE12 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
LMX1AQ8TE12 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
LMX1AQ8TE12 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LMX1AQ8TE12 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LMX1AQ8TE12 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
LMX1AQ8TE12 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
LMX1AQ8TE12 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC16.27■□□□□ 0.2
LMX1AQ8TE12 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC16.27■□□□□ 0.2
LMX1AQ8TE12 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC16.27■□□□□ 0.2
LMX1AQ8TE12 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC16.27■□□□□ 0.2
LMX1AQ8TE12 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC16.27■□□□□ 0.2
LMX1AQ8TE12 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC16.27■□□□□ 0.2
LMX1AQ8TE12 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
LMX1AQ8TE12 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
LMX1AQ8TE12 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LMX1AQ8TE12 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC16.27■□□□□ 0.2
LMX1AQ8TE12 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LMX1AQ8TE12 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
LMX1AQ8TE12 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
LMX1AQ8TE12 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
LMX1AQ8TE12 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.19
LMX1AQ8TE12 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
LMX1AQ8TE12 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
LMX1AQ8TE12 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
LMX1AQ8TE12 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC16.27■□□□□ 0.19
LMX1AQ8TE12 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC16.27■□□□□ 0.19
LMX1AQ8TE12 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC16.27■□□□□ 0.19
LMX1AQ8TE12 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
LMX1AQ8TE12 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LMX1AQ8TE12 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
LMX1AQ8TE12 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC16.26■□□□□ 0.19
LMX1AQ8TE12 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC16.26■□□□□ 0.19
LMX1AQ8TE12 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC16.26■□□□□ 0.19
LMX1AQ8TE12 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC16.26■□□□□ 0.19
LMX1AQ8TE12 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC16.26■□□□□ 0.19
LMX1AQ8TE12 TSPY16P-201ENST00000449843 468 ntBASIC16.26■□□□□ 0.19
LMX1AQ8TE12 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC16.26■□□□□ 0.19
LMX1AQ8TE12 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC16.26■□□□□ 0.19
LMX1AQ8TE12 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC16.26■□□□□ 0.19
LMX1AQ8TE12 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
LMX1AQ8TE12 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
LMX1AQ8TE12 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
LMX1AQ8TE12 AL158211.3-201ENST00000607385 239 ntBASIC16.26■□□□□ 0.19
LMX1AQ8TE12 AC003101.2-201ENST00000612557 442 ntBASIC16.26■□□□□ 0.19
LMX1AQ8TE12 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC16.26■□□□□ 0.19
LMX1AQ8TE12 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
LMX1AQ8TE12 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC16.26■□□□□ 0.19
LMX1AQ8TE12 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LMX1AQ8TE12 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LMX1AQ8TE12 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC16.26■□□□□ 0.19
LMX1AQ8TE12 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC16.26■□□□□ 0.19
LMX1AQ8TE12 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LMX1AQ8TE12 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
LMX1AQ8TE12 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
LMX1AQ8TE12 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LMX1AQ8TE12 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
LMX1AQ8TE12 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC16.26■□□□□ 0.19
LMX1AQ8TE12 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LMX1AQ8TE12 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
LMX1AQ8TE12 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC16.25■□□□□ 0.19
LMX1AQ8TE12 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
LMX1AQ8TE12 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LMX1AQ8TE12 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC16.25■□□□□ 0.19
LMX1AQ8TE12 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC16.25■□□□□ 0.19
LMX1AQ8TE12 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
LMX1AQ8TE12 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
LMX1AQ8TE12 AC092068.3-201ENST00000587894 2016 ntBASIC16.25■□□□□ 0.19
LMX1AQ8TE12 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LMX1AQ8TE12 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
LMX1AQ8TE12 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC16.25■□□□□ 0.19
LMX1AQ8TE12 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LMX1AQ8TE12 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
LMX1AQ8TE12 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LMX1AQ8TE12 PP14571-201ENST00000404327 934 ntTSL 2 BASIC16.25■□□□□ 0.19
LMX1AQ8TE12 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC16.25■□□□□ 0.19
LMX1AQ8TE12 AC142381.1-201ENST00000426099 345 ntBASIC16.25■□□□□ 0.19
LMX1AQ8TE12 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC16.25■□□□□ 0.19
LMX1AQ8TE12 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC16.25■□□□□ 0.19
LMX1AQ8TE12 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LMX1AQ8TE12 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC16.25■□□□□ 0.19
LMX1AQ8TE12 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LMX1AQ8TE12 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
LMX1AQ8TE12 AC097493.3-201ENST00000509725 367 ntBASIC16.25■□□□□ 0.19
LMX1AQ8TE12 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LMX1AQ8TE12 PRYP6-201ENST00000514804 343 ntBASIC16.25■□□□□ 0.19
LMX1AQ8TE12 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LMX1AQ8TE12 SIGLEC29P-201ENST00000599873 1114 ntBASIC16.25■□□□□ 0.19
LMX1AQ8TE12 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
LMX1AQ8TE12 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
LMX1AQ8TE12 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
LMX1AQ8TE12 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms