Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
CLHC1Q8NHS4 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC16.15■□□□□ 0.18
CLHC1Q8NHS4 LSM5-204ENST00000409909 740 ntTSL 2 BASIC16.15■□□□□ 0.18
CLHC1Q8NHS4 HCG4P8-203ENST00000443049 980 ntBASIC16.15■□□□□ 0.18
CLHC1Q8NHS4 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC16.15■□□□□ 0.18
CLHC1Q8NHS4 TERC-201ENST00000602385 541 ntBASIC16.15■□□□□ 0.18
CLHC1Q8NHS4 AC132872.4-202ENST00000622924 2756 ntBASIC16.15■□□□□ 0.18
CLHC1Q8NHS4 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC16.15■□□□□ 0.18
CLHC1Q8NHS4 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
CLHC1Q8NHS4 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLHC1Q8NHS4 LINC00895-201ENST00000629028 1637 ntBASIC16.15■□□□□ 0.18
CLHC1Q8NHS4 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLHC1Q8NHS4 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CLHC1Q8NHS4 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC16.15■□□□□ 0.18
CLHC1Q8NHS4 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
CLHC1Q8NHS4 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC16.14■□□□□ 0.18
CLHC1Q8NHS4 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
CLHC1Q8NHS4 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
CLHC1Q8NHS4 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLHC1Q8NHS4 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC16.14■□□□□ 0.17
CLHC1Q8NHS4 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
CLHC1Q8NHS4 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
CLHC1Q8NHS4 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC16.14■□□□□ 0.17
CLHC1Q8NHS4 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLHC1Q8NHS4 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC16.14■□□□□ 0.17
CLHC1Q8NHS4 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLHC1Q8NHS4 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
CLHC1Q8NHS4 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLHC1Q8NHS4 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLHC1Q8NHS4 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
CLHC1Q8NHS4 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLHC1Q8NHS4 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLHC1Q8NHS4 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLHC1Q8NHS4 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLHC1Q8NHS4 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLHC1Q8NHS4 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLHC1Q8NHS4 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CLHC1Q8NHS4 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CLHC1Q8NHS4 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLHC1Q8NHS4 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLHC1Q8NHS4 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC16.14■□□□□ 0.17
CLHC1Q8NHS4 MIR3652-201ENST00000579335 131 ntBASIC16.14■□□□□ 0.17
CLHC1Q8NHS4 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
CLHC1Q8NHS4 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
CLHC1Q8NHS4 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CLHC1Q8NHS4 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLHC1Q8NHS4 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLHC1Q8NHS4 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLHC1Q8NHS4 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
CLHC1Q8NHS4 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC16.14■□□□□ 0.17
CLHC1Q8NHS4 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC16.14■□□□□ 0.17
CLHC1Q8NHS4 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC16.14■□□□□ 0.17
CLHC1Q8NHS4 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC16.13■□□□□ 0.17
CLHC1Q8NHS4 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC16.13■□□□□ 0.17
CLHC1Q8NHS4 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC16.13■□□□□ 0.17
CLHC1Q8NHS4 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CLHC1Q8NHS4 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC16.13■□□□□ 0.17
CLHC1Q8NHS4 CYP2T1P-202ENST00000641596 2535 ntBASIC16.13■□□□□ 0.17
CLHC1Q8NHS4 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CLHC1Q8NHS4 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
CLHC1Q8NHS4 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC16.13■□□□□ 0.17
CLHC1Q8NHS4 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CLHC1Q8NHS4 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC16.13■□□□□ 0.17
CLHC1Q8NHS4 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CLHC1Q8NHS4 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC16.13■□□□□ 0.17
CLHC1Q8NHS4 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CLHC1Q8NHS4 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC16.13■□□□□ 0.17
CLHC1Q8NHS4 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
CLHC1Q8NHS4 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CLHC1Q8NHS4 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CLHC1Q8NHS4 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CLHC1Q8NHS4 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
CLHC1Q8NHS4 PRYP5-201ENST00000451909 266 ntBASIC16.13■□□□□ 0.17
CLHC1Q8NHS4 SART3-203ENST00000546611 1184 ntBASIC16.13■□□□□ 0.17
CLHC1Q8NHS4 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC16.13■□□□□ 0.17
CLHC1Q8NHS4 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC16.13■□□□□ 0.17
CLHC1Q8NHS4 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC16.13■□□□□ 0.17
CLHC1Q8NHS4 AL139288.1-201ENST00000623748 933 ntBASIC16.13■□□□□ 0.17
CLHC1Q8NHS4 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC16.13■□□□□ 0.17
CLHC1Q8NHS4 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC16.13■□□□□ 0.17
CLHC1Q8NHS4 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC16.13■□□□□ 0.17
CLHC1Q8NHS4 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CLHC1Q8NHS4 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
CLHC1Q8NHS4 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC16.13■□□□□ 0.17
CLHC1Q8NHS4 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CLHC1Q8NHS4 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CLHC1Q8NHS4 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CLHC1Q8NHS4 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CLHC1Q8NHS4 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CLHC1Q8NHS4 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC16.13■□□□□ 0.17
CLHC1Q8NHS4 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CLHC1Q8NHS4 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
CLHC1Q8NHS4 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CLHC1Q8NHS4 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CLHC1Q8NHS4 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CLHC1Q8NHS4 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CLHC1Q8NHS4 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
CLHC1Q8NHS4 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CLHC1Q8NHS4 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
CLHC1Q8NHS4 F11R-206ENST00000621309 4770 ntTSL 5 BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 67.6 ms