Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SKA3Q8IX90 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
SKA3Q8IX90 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SKA3Q8IX90 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SKA3Q8IX90 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SKA3Q8IX90 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SKA3Q8IX90 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SKA3Q8IX90 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
SKA3Q8IX90 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SKA3Q8IX90 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
SKA3Q8IX90 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SKA3Q8IX90 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC14.88□□□□□ -0.03
SKA3Q8IX90 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SKA3Q8IX90 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC14.88□□□□□ -0.03
SKA3Q8IX90 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SKA3Q8IX90 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SKA3Q8IX90 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SKA3Q8IX90 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
SKA3Q8IX90 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC14.88□□□□□ -0.03
SKA3Q8IX90 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC14.88□□□□□ -0.03
SKA3Q8IX90 AC108073.2-201ENST00000464002 357 ntBASIC14.88□□□□□ -0.03
SKA3Q8IX90 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC14.88□□□□□ -0.03
SKA3Q8IX90 CIPC-205ENST00000555437 566 ntTSL 3 BASIC14.88□□□□□ -0.03
SKA3Q8IX90 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC14.88□□□□□ -0.03
SKA3Q8IX90 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC14.88□□□□□ -0.03
SKA3Q8IX90 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
SKA3Q8IX90 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
SKA3Q8IX90 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SKA3Q8IX90 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
SKA3Q8IX90 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
SKA3Q8IX90 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC14.88□□□□□ -0.03
SKA3Q8IX90 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SKA3Q8IX90 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SKA3Q8IX90 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
SKA3Q8IX90 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
SKA3Q8IX90 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC14.88□□□□□ -0.03
SKA3Q8IX90 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SKA3Q8IX90 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC14.87□□□□□ -0.03
SKA3Q8IX90 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
SKA3Q8IX90 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
SKA3Q8IX90 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
SKA3Q8IX90 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SKA3Q8IX90 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SKA3Q8IX90 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SKA3Q8IX90 KRT8P49-201ENST00000604166 1432 ntBASIC14.87□□□□□ -0.03
SKA3Q8IX90 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SKA3Q8IX90 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
SKA3Q8IX90 MRPL20P1-201ENST00000400819 433 ntBASIC14.87□□□□□ -0.03
SKA3Q8IX90 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC14.87□□□□□ -0.03
SKA3Q8IX90 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC14.87□□□□□ -0.03
SKA3Q8IX90 AC108751.1-201ENST00000490852 363 ntBASIC14.87□□□□□ -0.03
SKA3Q8IX90 CD63-204ENST00000546939 779 ntTSL 3 BASIC14.87□□□□□ -0.03
SKA3Q8IX90 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC14.87□□□□□ -0.03
SKA3Q8IX90 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC14.87□□□□□ -0.03
SKA3Q8IX90 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SKA3Q8IX90 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC14.87□□□□□ -0.03
SKA3Q8IX90 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SKA3Q8IX90 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC14.87□□□□□ -0.03
SKA3Q8IX90 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
SKA3Q8IX90 PCDHA1-201ENST00000378133 2726 ntBASIC14.87□□□□□ -0.03
SKA3Q8IX90 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SKA3Q8IX90 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC14.87□□□□□ -0.03
SKA3Q8IX90 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SKA3Q8IX90 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SKA3Q8IX90 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC14.87□□□□□ -0.03
SKA3Q8IX90 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
SKA3Q8IX90 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SKA3Q8IX90 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
SKA3Q8IX90 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SKA3Q8IX90 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SKA3Q8IX90 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC14.87□□□□□ -0.03
SKA3Q8IX90 IL9RP2-201ENST00000423948 1312 ntBASIC14.87□□□□□ -0.03
SKA3Q8IX90 AC092850.2-201ENST00000623821 2697 ntBASIC14.87□□□□□ -0.03
SKA3Q8IX90 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
SKA3Q8IX90 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SKA3Q8IX90 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
SKA3Q8IX90 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SKA3Q8IX90 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC14.87□□□□□ -0.03
SKA3Q8IX90 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SKA3Q8IX90 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SKA3Q8IX90 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SKA3Q8IX90 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SKA3Q8IX90 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC14.86□□□□□ -0.03
SKA3Q8IX90 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
SKA3Q8IX90 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
SKA3Q8IX90 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
SKA3Q8IX90 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SKA3Q8IX90 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SKA3Q8IX90 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SKA3Q8IX90 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SKA3Q8IX90 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SKA3Q8IX90 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SKA3Q8IX90 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
SKA3Q8IX90 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
SKA3Q8IX90 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SKA3Q8IX90 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC14.86□□□□□ -0.03
SKA3Q8IX90 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.03
SKA3Q8IX90 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC14.86□□□□□ -0.03
SKA3Q8IX90 AL590627.1-203ENST00000421194 1026 ntBASIC14.86□□□□□ -0.03
SKA3Q8IX90 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC14.86□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms