Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SH3RF1Q7Z6J0 HNRNPRP1-201ENST00000453465 1695 ntBASIC19.16■□□□□ 0.66
SH3RF1Q7Z6J0 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
SH3RF1Q7Z6J0 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC19.16■□□□□ 0.66
SH3RF1Q7Z6J0 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC19.16■□□□□ 0.66
SH3RF1Q7Z6J0 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SH3RF1Q7Z6J0 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
SH3RF1Q7Z6J0 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SH3RF1Q7Z6J0 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
SH3RF1Q7Z6J0 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC19.16■□□□□ 0.66
SH3RF1Q7Z6J0 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC19.16■□□□□ 0.66
SH3RF1Q7Z6J0 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC19.16■□□□□ 0.66
SH3RF1Q7Z6J0 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SH3RF1Q7Z6J0 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC19.15■□□□□ 0.66
SH3RF1Q7Z6J0 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
SH3RF1Q7Z6J0 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC19.15■□□□□ 0.66
SH3RF1Q7Z6J0 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SH3RF1Q7Z6J0 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SH3RF1Q7Z6J0 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SH3RF1Q7Z6J0 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC19.15■□□□□ 0.66
SH3RF1Q7Z6J0 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC19.15■□□□□ 0.66
SH3RF1Q7Z6J0 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
SH3RF1Q7Z6J0 UGT1A2P-201ENST00000454886 866 ntBASIC19.15■□□□□ 0.66
SH3RF1Q7Z6J0 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC19.15■□□□□ 0.66
SH3RF1Q7Z6J0 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC19.15■□□□□ 0.66
SH3RF1Q7Z6J0 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC19.15■□□□□ 0.66
SH3RF1Q7Z6J0 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC19.15■□□□□ 0.66
SH3RF1Q7Z6J0 AC005225.4-201ENST00000557330 545 ntBASIC19.15■□□□□ 0.66
SH3RF1Q7Z6J0 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SH3RF1Q7Z6J0 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC19.15■□□□□ 0.66
SH3RF1Q7Z6J0 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC19.15■□□□□ 0.66
SH3RF1Q7Z6J0 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SH3RF1Q7Z6J0 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC19.15■□□□□ 0.66
SH3RF1Q7Z6J0 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SH3RF1Q7Z6J0 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SH3RF1Q7Z6J0 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC19.15■□□□□ 0.66
SH3RF1Q7Z6J0 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
SH3RF1Q7Z6J0 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SH3RF1Q7Z6J0 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SH3RF1Q7Z6J0 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC19.15■□□□□ 0.66
SH3RF1Q7Z6J0 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SH3RF1Q7Z6J0 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SH3RF1Q7Z6J0 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
SH3RF1Q7Z6J0 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SH3RF1Q7Z6J0 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SH3RF1Q7Z6J0 TNRC18P3-201ENST00000441896 2691 ntBASIC19.15■□□□□ 0.66
SH3RF1Q7Z6J0 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
SH3RF1Q7Z6J0 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SH3RF1Q7Z6J0 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
SH3RF1Q7Z6J0 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC19.14■□□□□ 0.66
SH3RF1Q7Z6J0 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC19.14■□□□□ 0.66
SH3RF1Q7Z6J0 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC19.14■□□□□ 0.66
SH3RF1Q7Z6J0 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC19.14■□□□□ 0.66
SH3RF1Q7Z6J0 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
SH3RF1Q7Z6J0 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC19.14■□□□□ 0.66
SH3RF1Q7Z6J0 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC19.14■□□□□ 0.66
SH3RF1Q7Z6J0 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
SH3RF1Q7Z6J0 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SH3RF1Q7Z6J0 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SH3RF1Q7Z6J0 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC19.14■□□□□ 0.65
SH3RF1Q7Z6J0 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
SH3RF1Q7Z6J0 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC19.14■□□□□ 0.65
SH3RF1Q7Z6J0 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SH3RF1Q7Z6J0 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SH3RF1Q7Z6J0 AC055876.3-201ENST00000431496 288 ntBASIC19.14■□□□□ 0.65
SH3RF1Q7Z6J0 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC19.14■□□□□ 0.65
SH3RF1Q7Z6J0 OARD1-208ENST00000469104 704 ntTSL 2 BASIC19.14■□□□□ 0.65
SH3RF1Q7Z6J0 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC19.14■□□□□ 0.65
SH3RF1Q7Z6J0 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC19.14■□□□□ 0.65
SH3RF1Q7Z6J0 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
SH3RF1Q7Z6J0 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SH3RF1Q7Z6J0 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC19.14■□□□□ 0.65
SH3RF1Q7Z6J0 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC19.14■□□□□ 0.65
SH3RF1Q7Z6J0 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SH3RF1Q7Z6J0 AC138649.4-201ENST00000612222 287 ntBASIC19.14■□□□□ 0.65
SH3RF1Q7Z6J0 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC19.14■□□□□ 0.65
SH3RF1Q7Z6J0 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SH3RF1Q7Z6J0 AL603756.1-201ENST00000606511 2163 ntBASIC19.14■□□□□ 0.65
SH3RF1Q7Z6J0 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SH3RF1Q7Z6J0 AL590787.1-201ENST00000568856 1315 ntBASIC19.14■□□□□ 0.65
SH3RF1Q7Z6J0 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC19.14■□□□□ 0.65
SH3RF1Q7Z6J0 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
SH3RF1Q7Z6J0 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
SH3RF1Q7Z6J0 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
SH3RF1Q7Z6J0 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
SH3RF1Q7Z6J0 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SH3RF1Q7Z6J0 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SH3RF1Q7Z6J0 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
SH3RF1Q7Z6J0 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SH3RF1Q7Z6J0 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SH3RF1Q7Z6J0 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC19.13■□□□□ 0.65
SH3RF1Q7Z6J0 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
SH3RF1Q7Z6J0 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SH3RF1Q7Z6J0 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC19.13■□□□□ 0.65
SH3RF1Q7Z6J0 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
SH3RF1Q7Z6J0 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SH3RF1Q7Z6J0 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
SH3RF1Q7Z6J0 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SH3RF1Q7Z6J0 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SH3RF1Q7Z6J0 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 76.3 ms