Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC13.99□□□□□ -0.17
PDLIM3Q53GG5 BET1L-206ENST00000486280 665 ntTSL 3 BASIC13.99□□□□□ -0.17
PDLIM3Q53GG5 NMU-202ENST00000505262 693 ntTSL 3 BASIC13.99□□□□□ -0.17
PDLIM3Q53GG5 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC13.99□□□□□ -0.17
PDLIM3Q53GG5 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC13.99□□□□□ -0.17
PDLIM3Q53GG5 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC13.99□□□□□ -0.17
PDLIM3Q53GG5 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC13.99□□□□□ -0.17
PDLIM3Q53GG5 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC13.99□□□□□ -0.17
PDLIM3Q53GG5 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC13.99□□□□□ -0.17
PDLIM3Q53GG5 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
PDLIM3Q53GG5 IGHV3OR16-7-201ENST00000604106 360 ntBASIC13.99□□□□□ -0.17
PDLIM3Q53GG5 CCNC-219ENST00000627680 896 ntTSL 5 BASIC13.99□□□□□ -0.17
PDLIM3Q53GG5 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
PDLIM3Q53GG5 ADM-208ENST00000534464 1640 ntTSL 2 BASIC13.99□□□□□ -0.17
PDLIM3Q53GG5 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
PDLIM3Q53GG5 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
PDLIM3Q53GG5 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
PDLIM3Q53GG5 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
PDLIM3Q53GG5 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
PDLIM3Q53GG5 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
PDLIM3Q53GG5 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC13.99□□□□□ -0.17
PDLIM3Q53GG5 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC13.99□□□□□ -0.17
PDLIM3Q53GG5 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
PDLIM3Q53GG5 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC13.99□□□□□ -0.17
PDLIM3Q53GG5 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
PDLIM3Q53GG5 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
PDLIM3Q53GG5 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
PDLIM3Q53GG5 AC008894.3-201ENST00000624324 3103 ntBASIC13.99□□□□□ -0.17
PDLIM3Q53GG5 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
PDLIM3Q53GG5 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
PDLIM3Q53GG5 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
PDLIM3Q53GG5 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
PDLIM3Q53GG5 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
PDLIM3Q53GG5 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
PDLIM3Q53GG5 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC13.98□□□□□ -0.17
PDLIM3Q53GG5 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC13.98□□□□□ -0.17
PDLIM3Q53GG5 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
PDLIM3Q53GG5 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
PDLIM3Q53GG5 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
PDLIM3Q53GG5 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
PDLIM3Q53GG5 UBC-206ENST00000538617 1303 ntTSL 5 BASIC13.98□□□□□ -0.17
PDLIM3Q53GG5 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC13.98□□□□□ -0.17
PDLIM3Q53GG5 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
PDLIM3Q53GG5 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC13.98□□□□□ -0.17
PDLIM3Q53GG5 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
PDLIM3Q53GG5 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
PDLIM3Q53GG5 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
PDLIM3Q53GG5 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
PDLIM3Q53GG5 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC13.98□□□□□ -0.17
PDLIM3Q53GG5 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
PDLIM3Q53GG5 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC13.98□□□□□ -0.17
PDLIM3Q53GG5 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
PDLIM3Q53GG5 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC13.98□□□□□ -0.17
PDLIM3Q53GG5 AC018712.1-201ENST00000455767 687 ntBASIC13.98□□□□□ -0.17
PDLIM3Q53GG5 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC13.98□□□□□ -0.17
PDLIM3Q53GG5 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
PDLIM3Q53GG5 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
PDLIM3Q53GG5 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC13.98□□□□□ -0.17
PDLIM3Q53GG5 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
PDLIM3Q53GG5 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
PDLIM3Q53GG5 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
PDLIM3Q53GG5 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
PDLIM3Q53GG5 TBC1D3P5-201ENST00000579401 1545 ntBASIC13.98□□□□□ -0.17
PDLIM3Q53GG5 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
PDLIM3Q53GG5 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC13.98□□□□□ -0.17
PDLIM3Q53GG5 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
PDLIM3Q53GG5 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
PDLIM3Q53GG5 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
PDLIM3Q53GG5 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC13.98□□□□□ -0.17
PDLIM3Q53GG5 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC13.98□□□□□ -0.17
PDLIM3Q53GG5 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
PDLIM3Q53GG5 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC13.98□□□□□ -0.17
PDLIM3Q53GG5 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC13.98□□□□□ -0.17
PDLIM3Q53GG5 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
PDLIM3Q53GG5 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 Z83836.1-201ENST00000624605 1642 ntBASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 AC005915.1-201ENST00000624912 2018 ntBASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 SYS1-203ENST00000414310 795 ntTSL 3 BASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 PON3-205ENST00000451904 1053 ntTSL 3 BASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms