Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC15.91■□□□□ 0.14
LIM2P55344 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
LIM2P55344 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
LIM2P55344 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC15.91■□□□□ 0.14
LIM2P55344 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LIM2P55344 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC15.91■□□□□ 0.14
LIM2P55344 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
LIM2P55344 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LIM2P55344 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC15.91■□□□□ 0.14
LIM2P55344 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LIM2P55344 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC15.91■□□□□ 0.14
LIM2P55344 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
LIM2P55344 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC15.91■□□□□ 0.14
LIM2P55344 RHOQP3-201ENST00000437982 621 ntBASIC15.91■□□□□ 0.14
LIM2P55344 AL513480.1-201ENST00000451731 511 ntBASIC15.91■□□□□ 0.14
LIM2P55344 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
LIM2P55344 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
LIM2P55344 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC15.91■□□□□ 0.14
LIM2P55344 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC15.91■□□□□ 0.14
LIM2P55344 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LIM2P55344 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC15.91■□□□□ 0.14
LIM2P55344 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
LIM2P55344 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
LIM2P55344 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
LIM2P55344 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LIM2P55344 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
LIM2P55344 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
LIM2P55344 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
LIM2P55344 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC15.91■□□□□ 0.14
LIM2P55344 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
LIM2P55344 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC15.91■□□□□ 0.14
LIM2P55344 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC15.91■□□□□ 0.14
LIM2P55344 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
LIM2P55344 AC079328.2-201ENST00000561241 3354 ntBASIC15.9■□□□□ 0.14
LIM2P55344 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LIM2P55344 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIM2P55344 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC15.9■□□□□ 0.14
LIM2P55344 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
LIM2P55344 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC15.9■□□□□ 0.14
LIM2P55344 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIM2P55344 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIM2P55344 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC15.9■□□□□ 0.14
LIM2P55344 MIR574-201ENST00000385209 96 ntBASIC15.9■□□□□ 0.14
LIM2P55344 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
LIM2P55344 HCG4-201ENST00000418983 998 ntBASIC15.9■□□□□ 0.14
LIM2P55344 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC15.9■□□□□ 0.14
LIM2P55344 AP000347.1-202ENST00000435868 847 ntBASIC15.9■□□□□ 0.14
LIM2P55344 KRT18P3-201ENST00000451602 1288 ntBASIC15.9■□□□□ 0.14
LIM2P55344 RNA5SP416-201ENST00000516838 111 ntBASIC15.9■□□□□ 0.14
LIM2P55344 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC15.9■□□□□ 0.14
LIM2P55344 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC15.9■□□□□ 0.14
LIM2P55344 AC087641.1-201ENST00000557561 1021 ntBASIC15.9■□□□□ 0.14
LIM2P55344 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC15.9■□□□□ 0.14
LIM2P55344 AC018845.2-201ENST00000568326 409 ntBASIC15.9■□□□□ 0.14
LIM2P55344 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIM2P55344 MIR4515-201ENST00000584082 81 ntBASIC15.9■□□□□ 0.14
LIM2P55344 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LIM2P55344 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LIM2P55344 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC15.9■□□□□ 0.14
LIM2P55344 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIM2P55344 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIM2P55344 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LIM2P55344 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIM2P55344 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LIM2P55344 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIM2P55344 PC-214ENST00000628663 1470 ntTSL 5 BASIC15.9■□□□□ 0.14
LIM2P55344 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIM2P55344 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIM2P55344 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC15.9■□□□□ 0.14
LIM2P55344 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LIM2P55344 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIM2P55344 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIM2P55344 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.14
LIM2P55344 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIM2P55344 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIM2P55344 AC012569.1-201ENST00000591191 1524 ntBASIC15.89■□□□□ 0.13
LIM2P55344 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIM2P55344 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIM2P55344 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIM2P55344 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIM2P55344 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
LIM2P55344 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIM2P55344 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIM2P55344 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIM2P55344 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIM2P55344 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LIM2P55344 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIM2P55344 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LIM2P55344 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIM2P55344 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIM2P55344 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LIM2P55344 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIM2P55344 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIM2P55344 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIM2P55344 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
LIM2P55344 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC15.89■□□□□ 0.13
LIM2P55344 KRT18P58-201ENST00000527480 1120 ntBASIC15.89■□□□□ 0.13
LIM2P55344 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC15.89■□□□□ 0.13
LIM2P55344 MAL2-202ENST00000531508 892 ntTSL 3 BASIC15.89■□□□□ 0.13
LIM2P55344 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC15.89■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 63.7 ms