Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
FOXA1P55317 SLC25A6P2-201ENST00000497974 877 ntBASIC16.25■□□□□ 0.19
FOXA1P55317 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
FOXA1P55317 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC16.25■□□□□ 0.19
FOXA1P55317 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC16.25■□□□□ 0.19
FOXA1P55317 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC16.25■□□□□ 0.19
FOXA1P55317 AC139887.3-201ENST00000568585 713 ntBASIC16.25■□□□□ 0.19
FOXA1P55317 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC16.25■□□□□ 0.19
FOXA1P55317 MIR3652-201ENST00000579335 131 ntBASIC16.25■□□□□ 0.19
FOXA1P55317 AC008608.2-201ENST00000606089 416 ntBASIC16.25■□□□□ 0.19
FOXA1P55317 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
FOXA1P55317 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
FOXA1P55317 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
FOXA1P55317 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
FOXA1P55317 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
FOXA1P55317 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC16.25■□□□□ 0.19
FOXA1P55317 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
FOXA1P55317 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC16.25■□□□□ 0.19
FOXA1P55317 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC16.25■□□□□ 0.19
FOXA1P55317 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC16.25■□□□□ 0.19
FOXA1P55317 AC006504.4-201ENST00000592118 1568 ntBASIC16.25■□□□□ 0.19
FOXA1P55317 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
FOXA1P55317 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
FOXA1P55317 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
FOXA1P55317 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
FOXA1P55317 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC16.24■□□□□ 0.19
FOXA1P55317 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
FOXA1P55317 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
FOXA1P55317 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC16.24■□□□□ 0.19
FOXA1P55317 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC16.24■□□□□ 0.19
FOXA1P55317 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC16.24■□□□□ 0.19
FOXA1P55317 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
FOXA1P55317 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
FOXA1P55317 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC16.24■□□□□ 0.19
FOXA1P55317 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC16.24■□□□□ 0.19
FOXA1P55317 AKR1C7P-201ENST00000305623 895 ntBASIC16.24■□□□□ 0.19
FOXA1P55317 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC16.24■□□□□ 0.19
FOXA1P55317 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
FOXA1P55317 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
FOXA1P55317 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
FOXA1P55317 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
FOXA1P55317 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
FOXA1P55317 TSPY19P-201ENST00000418461 509 ntBASIC16.24■□□□□ 0.19
FOXA1P55317 TSPY18P-201ENST00000441642 509 ntBASIC16.24■□□□□ 0.19
FOXA1P55317 HCG4P8-203ENST00000443049 980 ntBASIC16.24■□□□□ 0.19
FOXA1P55317 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC16.24■□□□□ 0.19
FOXA1P55317 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
FOXA1P55317 SKP2-204ENST00000508514 821 ntTSL 3 BASIC16.24■□□□□ 0.19
FOXA1P55317 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
FOXA1P55317 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC16.24■□□□□ 0.19
FOXA1P55317 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC16.24■□□□□ 0.19
FOXA1P55317 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC16.24■□□□□ 0.19
FOXA1P55317 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
FOXA1P55317 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC16.24■□□□□ 0.19
FOXA1P55317 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
FOXA1P55317 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC16.24■□□□□ 0.19
FOXA1P55317 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
FOXA1P55317 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
FOXA1P55317 PI4KAP1-204ENST00000612579 1703 ntBASIC16.24■□□□□ 0.19
FOXA1P55317 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC16.24■□□□□ 0.19
FOXA1P55317 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
FOXA1P55317 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
FOXA1P55317 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
FOXA1P55317 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
FOXA1P55317 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
FOXA1P55317 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
FOXA1P55317 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC16.24■□□□□ 0.19
FOXA1P55317 AL596087.1-201ENST00000400979 1969 ntBASIC16.24■□□□□ 0.19
FOXA1P55317 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC16.24■□□□□ 0.19
FOXA1P55317 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC16.24■□□□□ 0.19
FOXA1P55317 AC024909.3-201ENST00000611513 2257 ntBASIC16.24■□□□□ 0.19
FOXA1P55317 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC16.24■□□□□ 0.19
FOXA1P55317 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
FOXA1P55317 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC16.23■□□□□ 0.19
FOXA1P55317 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
FOXA1P55317 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
FOXA1P55317 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
FOXA1P55317 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC16.23■□□□□ 0.19
FOXA1P55317 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC16.23■□□□□ 0.19
FOXA1P55317 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC16.23■□□□□ 0.19
FOXA1P55317 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
FOXA1P55317 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC16.23■□□□□ 0.19
FOXA1P55317 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
FOXA1P55317 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
FOXA1P55317 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC16.23■□□□□ 0.19
FOXA1P55317 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
FOXA1P55317 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
FOXA1P55317 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
FOXA1P55317 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
FOXA1P55317 DFFB-203ENST00000341385 572 ntTSL 5 BASIC16.23■□□□□ 0.19
FOXA1P55317 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
FOXA1P55317 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
FOXA1P55317 ELK2BP-201ENST00000415014 1224 ntBASIC16.23■□□□□ 0.19
FOXA1P55317 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC16.23■□□□□ 0.19
FOXA1P55317 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC16.23■□□□□ 0.19
FOXA1P55317 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC16.23■□□□□ 0.19
FOXA1P55317 ARTN-206ENST00000472435 402 ntTSL 3 BASIC16.23■□□□□ 0.19
FOXA1P55317 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC16.23■□□□□ 0.19
FOXA1P55317 AC025062.2-201ENST00000605477 670 ntBASIC16.23■□□□□ 0.19
FOXA1P55317 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms