Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
HOXA1P49639 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXA1P49639 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXA1P49639 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC13.99□□□□□ -0.17
HOXA1P49639 AC046185.3-201ENST00000623228 1824 ntBASIC13.99□□□□□ -0.17
HOXA1P49639 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
HOXA1P49639 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXA1P49639 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXA1P49639 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
HOXA1P49639 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXA1P49639 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC13.99□□□□□ -0.17
HOXA1P49639 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXA1P49639 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC13.99□□□□□ -0.17
HOXA1P49639 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXA1P49639 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC13.99□□□□□ -0.17
HOXA1P49639 LINC02012-201ENST00000608206 1725 ntBASIC13.99□□□□□ -0.17
HOXA1P49639 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXA1P49639 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXA1P49639 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC13.99□□□□□ -0.17
HOXA1P49639 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC13.99□□□□□ -0.17
HOXA1P49639 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
HOXA1P49639 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC13.99□□□□□ -0.17
HOXA1P49639 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXA1P49639 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC13.99□□□□□ -0.17
HOXA1P49639 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
HOXA1P49639 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
HOXA1P49639 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXA1P49639 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
HOXA1P49639 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXA1P49639 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXA1P49639 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXA1P49639 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC13.99□□□□□ -0.17
HOXA1P49639 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXA1P49639 AL359075.1-203ENST00000462729 1002 ntBASIC13.99□□□□□ -0.17
HOXA1P49639 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC13.99□□□□□ -0.17
HOXA1P49639 AL441883.1-201ENST00000566170 1045 ntBASIC13.99□□□□□ -0.17
HOXA1P49639 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC13.99□□□□□ -0.17
HOXA1P49639 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC13.99□□□□□ -0.17
HOXA1P49639 GPR32P1-201ENST00000601788 811 ntBASIC13.99□□□□□ -0.17
HOXA1P49639 AC145285.6-201ENST00000604632 637 ntBASIC13.99□□□□□ -0.17
HOXA1P49639 SPEG-225ENST00000617028 815 ntTSL 5 BASIC13.99□□□□□ -0.17
HOXA1P49639 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXA1P49639 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXA1P49639 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXA1P49639 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXA1P49639 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXA1P49639 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXA1P49639 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC13.99□□□□□ -0.17
HOXA1P49639 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
HOXA1P49639 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
HOXA1P49639 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXA1P49639 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC13.99□□□□□ -0.17
HOXA1P49639 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC13.99□□□□□ -0.17
HOXA1P49639 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
HOXA1P49639 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXA1P49639 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC13.99□□□□□ -0.17
HOXA1P49639 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXA1P49639 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC13.99□□□□□ -0.17
HOXA1P49639 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXA1P49639 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXA1P49639 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXA1P49639 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
HOXA1P49639 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC13.99□□□□□ -0.17
HOXA1P49639 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXA1P49639 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXA1P49639 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
HOXA1P49639 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXA1P49639 AC093525.9-201ENST00000624961 1746 ntBASIC13.98□□□□□ -0.17
HOXA1P49639 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXA1P49639 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC13.98□□□□□ -0.17
HOXA1P49639 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXA1P49639 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HOXA1P49639 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HOXA1P49639 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXA1P49639 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC13.98□□□□□ -0.17
HOXA1P49639 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC13.98□□□□□ -0.17
HOXA1P49639 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HOXA1P49639 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC13.98□□□□□ -0.17
HOXA1P49639 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXA1P49639 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC13.98□□□□□ -0.17
HOXA1P49639 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXA1P49639 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HOXA1P49639 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXA1P49639 MYCLP1-201ENST00000372451 1075 ntBASIC13.98□□□□□ -0.17
HOXA1P49639 CNP-204ENST00000472031 1019 ntTSL 2 BASIC13.98□□□□□ -0.17
HOXA1P49639 IGHV3-52-201ENST00000519770 353 ntBASIC13.98□□□□□ -0.17
HOXA1P49639 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HOXA1P49639 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC13.98□□□□□ -0.17
HOXA1P49639 DUT-205ENST00000558813 769 ntTSL 2 BASIC13.98□□□□□ -0.17
HOXA1P49639 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC13.98□□□□□ -0.17
HOXA1P49639 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC13.98□□□□□ -0.17
HOXA1P49639 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HOXA1P49639 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC13.98□□□□□ -0.17
HOXA1P49639 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXA1P49639 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXA1P49639 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC13.98□□□□□ -0.17
HOXA1P49639 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXA1P49639 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXA1P49639 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXA1P49639 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms